View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_high_7 (Length: 633)
Name: NF1129_high_7
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 99 - 417
Target Start/End: Complemental strand, 39078223 - 39077903
Alignment:
| Q |
99 |
tgaaccccatgtgacatacatcactgatttcaatgtcctattctagtttgttgtgagttttaccatttcccattacaaacaatcttcaacttgaaagctt |
198 |
Q |
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| T |
39078223 |
tgaaccccatgtgacatacatcactgatttcaatgtcctattctagtttgttgtgagttttaccatttcccattacaaacaatcttcaacttgaaagctt |
39078124 |
T |
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| Q |
199 |
aaaaattctttatattatctttacaaaattttgggattctcatataataataaacaacac--caattaacaatctactaaattttgtttactatgtcctt |
296 |
Q |
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| T |
39078123 |
aaaaattctttatattatctttacaaaattttgggattctcatataataataaacaacacaccaattaacaatctactaaattttgtttactatgtcctt |
39078024 |
T |
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| Q |
297 |
ttactatcttttagcacatgagttggttacaaatcccataaacaaaaaagcattgagtaattaacttttgttatcttgcatatgcatatgcatattttag |
396 |
Q |
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| T |
39078023 |
ttactatcttttagcacatgagttggttacaaatcccataaacaaaaaagcattgagtaattaacttttgttatcttgcatatgcatatgcatattttag |
39077924 |
T |
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| Q |
397 |
agtactatattgctattacat |
417 |
Q |
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||||||||||||||||||||| |
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| T |
39077923 |
agtactatattgctattacat |
39077903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 441 - 539
Target Start/End: Complemental strand, 39077873 - 39077774
Alignment:
| Q |
441 |
aggatcaatataagtggtagaattaagggttattttcagcttcagaaaaa-gtatccacatgaagaaattctataagaaatccaacatcaattagaagag |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077873 |
aggatcaatataagtggtagaattaagggttattttcagcttcagaaaaaagtatccacatgaagaaattctataagaaatccaacatcaattagaagag |
39077774 |
T |
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