View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_high_8 (Length: 579)
Name: NF1129_high_8
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 14811304 - 14811675
Alignment:
| Q |
16 |
atcttgaaaaacggaatcacagtgagatcagagactacataaaatgtaaatgaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaa |
115 |
Q |
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| T |
14811304 |
atctttaaaaacggaatcacagtgagatcagagactaaataaa-tgtaaataaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaa |
14811402 |
T |
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| Q |
116 |
ccaatcgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcaaagtcaacccatacttatgaatgagaaagctatcatccattacaaccct |
215 |
Q |
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| T |
14811403 |
ccaaccgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcgaagtcaacccatacttatgaatgagaaagctatcatccattacaaccct |
14811502 |
T |
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| Q |
216 |
tgtacccaacctaagcataatcctctttttgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtaataacatacactaaatgc |
315 |
Q |
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| T |
14811503 |
tgtacccaacctaagcataatgctctttctgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtgataacatacactaaatgc |
14811602 |
T |
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| Q |
316 |
ccgaagaacaaaggtcctaagcggccaacacactaggatgggattgttgcctgaatcttgttgccctacgaac |
388 |
Q |
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| T |
14811603 |
ccgaagaacaaaggtcctaagcggccaacacactaggatgggattgttgcctgaatcttgttgccctacgaac |
14811675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 460 - 579
Target Start/End: Original strand, 14811748 - 14811867
Alignment:
| Q |
460 |
taatttgtcatggcgtatccactcacatctatgtcgagcaaaattagcacaatgctaccaacacaaacaaggaaaaagctggtctcaacggaccacctcc |
559 |
Q |
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| T |
14811748 |
taatttttcatggcgtatcagctcacatctatgtcgagcaaaattagctcaatgctaccaacacgaccatggaaaaagctgctctcaacggaccacctac |
14811847 |
T |
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| Q |
560 |
gaaccaccctaaccttgatc |
579 |
Q |
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| T |
14811848 |
aaaccaccctaaccttgatc |
14811867 |
T |
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