View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_low_11 (Length: 569)

Name: NF1129_low_11
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_low_11
NF1129_low_11
[»] chr5 (1 HSPs)
chr5 (107-569)||(29078931-29079399)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 107 - 569
Target Start/End: Complemental strand, 29079399 - 29078931
Alignment:
Q  107 attaatcaacaaatcaaagtatgctatatata--gtaggtgcatctaatgtgtttgtttaggatatctaatctttgannnnnnnnnnnnnncttttgcgg 204  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||              |||||||||    
T  29079399 attaatcaacaaatcaaagtatgctatatatatagtaggtgcatctaatgtgtttgtt-aggatatctaatctttgatttattttttttttcttttgcgg 29079301  T
Q  205 tctttagagaggtcaatccataatttaatatatattagacatcattttnnnnnnn-taaaataacatcatgattaataattattgnnnnnnnn-caaata 302  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||        |||||||||||||| ||||||||||||||         ||||||    
T  29079300 tctttagagaggtaaatccataatttaatatatattagacatcttttttaaaaaaataaaataacatcataattaataattattgtttttttttcaaata 29079201  T
Q  303 ataataattgttgttgacaatttagaaaataaaacaaaccatcgtcgtcccctctccttctagaccctccttctaaatgtaaatttaacattagcccttc 402  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29079200 ataataattgttgttgacaatttagaaaataaaacaaactattgtcgtcccctctccttctagaccctccttctaaatgtaaatttaacattaacccttc 29079101  T
Q  403 aaatcaaaaatagacnnnnnnnna-gaagaataaaaaatagacttggtatatagaatacttgaaatttttggt-gtaaaatagtgaggtacattgtttaa 500  Q
    |||||||||||| ||          ||||||||||||||| |||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  29079100 aaatcaaaaataaactttttttttcgaagaataaaaaatatacttagtatatggaatagttgaaatttttggttgtaaaatagtgaggtacattgtttaa 29079001  T
Q  501 taatatgaagatat-cttttattttacaagaatatgaagatattcttaaaaatagtttataaatgttaaa 569  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29079000 taatatgaagatattcttttattttacaagaatatgaagatattcttaaaaatagtttataaatgttaaa 29078931  T

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