View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_12 (Length: 567)
Name: NF1129_low_12
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 40 - 494
Target Start/End: Original strand, 1712134 - 1712595
Alignment:
| Q |
40 |
atatgattctcataatttcaaatgtttataaacagtacccaatttggatataagtccatcattgtctggttttagatatgatcatgtgatcaatgcaaac |
139 |
Q |
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| T |
1712134 |
atatgattctcctaatttcaaatgtttataaacagtacccaatttggatataagtccatcattgtctggttttagatatgatcatgtgatcaatgcaagc |
1712233 |
T |
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| Q |
140 |
aaaaataaatttggaaccaatctcaatatacatatctttagagaataatagggttatagttctttatgttattccaaaagttagaggtataaaatataga |
239 |
Q |
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| T |
1712234 |
aaaaataaatttggaaccaatctcaatatacatatctttagagaataatagggttatagttctttatgttattccaaaagttagaggtataaaatataga |
1712333 |
T |
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| Q |
240 |
aatgttgtttaacaacatttagggttatttgtgacgagnnnnnnnnttgaattcttatgtatattcattatgtgagaggtaaaagtgattctaggattat |
339 |
Q |
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| T |
1712334 |
aatgttgtttaacaacatttagggttatttgtgacgag-aaaaaaattgaattcttatgtatattcactatgtgagaggtaaaagtgattctaggattat |
1712432 |
T |
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| Q |
340 |
aaaattgatgttgacatgttattttggatgcttttgaagataattgtttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaa |
439 |
Q |
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| T |
1712433 |
aaaattgatgttgacatgttattttggatgcttttgaagataattgtttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaa |
1712532 |
T |
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| Q |
440 |
ataaaaattagtttcaaacctttttaac--------ttataaattcattattcaactaacttg |
494 |
Q |
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| T |
1712533 |
ataaaaattagtttcaaacctttttaacaactgtttttataaattcattattcaactaacttg |
1712595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 556
Target Start/End: Original strand, 1712610 - 1712645
Alignment:
| Q |
521 |
gttacgttgccttgattttatatttgttggcttcat |
556 |
Q |
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| T |
1712610 |
gttacgttgccttgattttatagttgttggcttcat |
1712645 |
T |
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