View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_14 (Length: 546)
Name: NF1129_low_14
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 355
Target Start/End: Original strand, 14811332 - 14811675
Alignment:
| Q |
11 |
cagagactacataaaatgtaaatgaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaaccaatcgagcgggatcaaaacgtggcct |
110 |
Q |
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| T |
14811332 |
cagagactaaataaa-tgtaaataaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaaccaaccgagcgggatcaaaacgtggcct |
14811430 |
T |
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| Q |
111 |
tttgatctcatcagagcgaagcaaagtcaacccatacttatgaatgagaaagctatcatccattacaacccttgtacccaacctaagcataatcctcttt |
210 |
Q |
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| T |
14811431 |
tttgatctcatcagagcgaagcgaagtcaacccatacttatgaatgagaaagctatcatccattacaacccttgtacccaacctaagcataatgctcttt |
14811530 |
T |
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| Q |
211 |
ttgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtaataacatacactaaatgcccgaagaacaaaggtcctaagcggccaa |
310 |
Q |
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| T |
14811531 |
ctgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtgataacatacactaaatgcccgaagaacaaaggtcctaagcggccaa |
14811630 |
T |
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| Q |
311 |
cacactaggatgggattgttgcctgaatcttgttgccctacgaac |
355 |
Q |
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| T |
14811631 |
cacactaggatgggattgttgcctgaatcttgttgccctacgaac |
14811675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 427 - 546
Target Start/End: Original strand, 14811748 - 14811867
Alignment:
| Q |
427 |
taatttgtcatggcgtatccactcacatctatgtcgagcaaaattagcacaatgctaccaacacaaacaaggaaaaagctggtctcaacggaccacctcc |
526 |
Q |
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| T |
14811748 |
taatttttcatggcgtatcagctcacatctatgtcgagcaaaattagctcaatgctaccaacacgaccatggaaaaagctgctctcaacggaccacctac |
14811847 |
T |
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| Q |
527 |
gaaccaccctaaccttgatc |
546 |
Q |
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| T |
14811848 |
aaaccaccctaaccttgatc |
14811867 |
T |
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