View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_18 (Length: 480)
Name: NF1129_low_18
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 31100124 - 31099750
Alignment:
| Q |
11 |
acaatatgatctctctattattgtttcatcgattaaactgaacaaactgaaatatatgtttaaataaacactttccgtactcaaaacatggttaattgtt |
110 |
Q |
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| T |
31100124 |
acaatatgatctctctattattgttttatcgattaaactgaacaaactgaaatatatgtttaaataaacactttccttactcagaacagtgttaattatt |
31100025 |
T |
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| Q |
111 |
gaacaacttttgtatcgcacgagtccttgtggatatgatactttgagtacttattttttatgctgctataaaagcaactcaccagtcatcgagaaaacca |
210 |
Q |
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| T |
31100024 |
gaacaacttttgtatcgcacgagtccttgtggatatgatactttgagtacttattttttatgctgctataaaagcaactcaccagtcatcgagaaaacca |
31099925 |
T |
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| Q |
211 |
tagtcatataaaacaagacatttgttgttgagaatgaacaaagaagagtcggatttgaagttcacaaacccatagtcatagagaaatttacacaaggttt |
310 |
Q |
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| T |
31099924 |
tagtcatataaaacaagacatttgttgttgagaatgaacaaagaagagtcggatttgaagttcacaaacccatagtcatagagaaatttacacaaggttt |
31099825 |
T |
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| Q |
311 |
tgaaccaggcaagtggtgtgttgggtttaggccgtaaataaactttcgtaggtgacaaatgttgtcatctgtttg |
385 |
Q |
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| T |
31099824 |
tgaaccaggcaagtggtgtgttgggtttaggccgtaaataaactttcgtaggtgacaaatgttgtcatctgtttg |
31099750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 21546655 - 21546735
Alignment:
| Q |
64 |
atatgtttaaataaacac--tttccgtactcaaaacatggttaa-ttgttgaacaacttttgtatcgcacgagtccttgtg |
141 |
Q |
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| T |
21546655 |
atatgtttaaataaactcattttccgtactcaaaacagttttaaatttttaaacaactttggtatcgcacgagtccatgtg |
21546735 |
T |
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