View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_20 (Length: 450)
Name: NF1129_low_20
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_20 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 442
Target Start/End: Complemental strand, 31378745 - 31378332
Alignment:
| Q |
30 |
gtaataaatatgactaatcaacaatgtcttacaaatcaatttaggatgttgattattattttcttaataatatttgagtaaggtac-tcacgtactccta |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
31378745 |
gtaataaatatgactaatcaacaatgtcttacaaatcaatttaggatgttgattattattttcttaataatatttgagtaaggtacatcacatactccta |
31378646 |
T |
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| Q |
129 |
catcatcaattattgaactaggatattgattattattttcttaataatgttttattcatataccttgtgatggattgctacaagtagatttgaatggaaa |
228 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31378645 |
catcatcaattattgagctaggatattgattattattttcttaataatgttttattcatataccttgtgatggatagctacaagtagatttgaatggaaa |
31378546 |
T |
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| Q |
229 |
aatttgacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaaattgataaagtatgatttggatattgcatggtattctctt |
328 |
Q |
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| T |
31378545 |
agtttcacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaaattgataaagtatgatttggatattgcatggtattctctt |
31378446 |
T |
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| Q |
329 |
attaaaaaataatccaaaaagttggataaaattcgtttaatggttgtaatatgcaattaactactgaaaagataacacaattcaaccccctctatttttc |
428 |
Q |
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| T |
31378445 |
attaaaaaatgatccaaaaagttggataaaatttgtttaatggttgtaatatgcgattaactactgaaaaaataacacaattcaaccccctctgtttttc |
31378346 |
T |
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| Q |
429 |
tcaccttctgtggt |
442 |
Q |
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| T |
31378345 |
tcaccttcagtggt |
31378332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 38548 - 38441
Alignment:
| Q |
189 |
taccttgtgatggattgctacaagtagatttgaatggaaaaatttgacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaa |
288 |
Q |
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| T |
38548 |
taccttatgatagatagctacaggtagatttgaatggacaagtttgttggtcaaggactttgtaattctaaattcatgaaattataaaatgtttttaaaa |
38449 |
T |
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| Q |
289 |
attgataa |
296 |
Q |
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| T |
38448 |
attgataa |
38441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 2531417 - 2531524
Alignment:
| Q |
189 |
taccttgtgatggattgctacaagtagatttgaatggaaaaatttgacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaa |
288 |
Q |
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|||||| |||| ||| ||||| ||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531417 |
taccttatgatagatagctacgggtagatttgaacggacaagtttgtcggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaa |
2531516 |
T |
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| Q |
289 |
attgataa |
296 |
Q |
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|||||||| |
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| T |
2531517 |
attgataa |
2531524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 2531664 - 2531728
Alignment:
| Q |
155 |
tgattattattttcttaataatgttttattcatataccttgtgatggattgctacaagtagattt |
219 |
Q |
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| T |
2531664 |
tgattattattttcttaataatgtttctttcatataccttgtgatggatagctacaagtagattt |
2531728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 23922525 - 23922469
Alignment:
| Q |
102 |
tttgagtaaggtac-tcacgtactcctacatcatcaattattgaactaggatattga |
157 |
Q |
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| T |
23922525 |
tttgagtaaggtacatcacatactcctgcatcatcaattattgagttaggatattga |
23922469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 436
Target Start/End: Complemental strand, 10917549 - 10917515
Alignment:
| Q |
402 |
aacacaattcaaccccctctatttttctcaccttc |
436 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
10917549 |
aacacaattcaaccccctgtatttttctcaccttc |
10917515 |
T |
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