View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_22 (Length: 443)
Name: NF1129_low_22
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 102 - 435
Target Start/End: Complemental strand, 2747490 - 2747157
Alignment:
| Q |
102 |
ctcttttagcctggagcgtctcaatgctcctgaaatttttgtatggaaccaaacaaaaccttactggcgctcaggtccatttaatggtcaaatgtttatt |
201 |
Q |
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| T |
2747490 |
ctcttttagcctggagcgtctcaatgctcctgaaatttttgtatggaaccaaacaaaaccttactggcgctcaggtccatttaatggtcaagtgtttatt |
2747391 |
T |
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| Q |
202 |
ggattaccaagccgtttgttgtacatttctgcatatctgaatggattcagcatttcaaggaaagataatggaagtcttgttgagactacgtatacactgc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747390 |
ggattaccaagccgtttgttgtacatttctgcatatctgaatggattcagcatttcaaggaaagataatggaagtcttgttgagactacgtatacactgc |
2747291 |
T |
|
| Q |
302 |
taaatagttcnnnnnnngcaactgctgtggtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaagttggaacaactgttgctca |
401 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747290 |
taaatagttctttttttgcaactgctgtggtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaagttggaacaactgttgctca |
2747191 |
T |
|
| Q |
402 |
acaaaatgaatgtgatatttatggtttctgtggt |
435 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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| T |
2747190 |
acaaaatgaatgtgatatttatggtttttgtggt |
2747157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 102 - 427
Target Start/End: Complemental strand, 2720616 - 2720291
Alignment:
| Q |
102 |
ctcttttagcctggagcgtctcaatgctcctgaaatttttgtatggaaccaaacaaaaccttactggcgctcaggtccatttaatggtcaaatgtttatt |
201 |
Q |
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|||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
2720616 |
ctcttttagcctcgagcgtctcaacgctcctgaagtgtttgtatggaaccaaacaaaaccttactggcgctcaggtccatggaatggtcaagtgtttatt |
2720517 |
T |
|
| Q |
202 |
ggattaccaagccgtttgttgtacatttctgcatatctgaatggattcagcatttcaaggaaagataatggaagtcttgttgagactacgtatacactgc |
301 |
Q |
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|| ||||||||||||| ||||| | ||||| |||||| ||||||||||||||| |||||||||||||||||| | |||||||| || || |||||| | |
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| T |
2720516 |
ggtttaccaagccgttcattgtatacttctggatatctaaatggattcagcattgcaaggaaagataatggaaatgttgttgagcttatgtttacactac |
2720417 |
T |
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| Q |
302 |
taaatagttcnnnnnnngcaactgctgtggtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaagttggaacaactgttgctca |
401 |
Q |
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|||||||||| | ||| |||||||| |||||||||||||||| |||||||||||||||| |||| | |||||||||| || | |||| |||| |
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| T |
2720416 |
taaatagttctgattttggaacccttgtggtgagttctgaaggcaagctggtttacacttcatggatcaataggtatcaagttgggacgaatgttcctca |
2720317 |
T |
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| Q |
402 |
acaaaatgaatgtgatatttatggtt |
427 |
Q |
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||||||||||||||| |||||||||| |
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| T |
2720316 |
acaaaatgaatgtgacatttatggtt |
2720291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 102 - 435
Target Start/End: Complemental strand, 2726006 - 2725676
Alignment:
| Q |
102 |
ctcttttagcctggagcgtctcaatgctcctgaaatttttgtatggaaccaaacaaaaccttactggcgctcaggtccatttaatggtcaaatgtttatt |
201 |
Q |
| |
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|||| ||||||| ||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||||||||| | || || |
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| T |
2726006 |
ctctcttagccttgagcgtctcaacagtcctgaagtgtttgtatggaaccaaacaaagccttactggcgctcaggtccatggaatggtcaagtacttgtt |
2725907 |
T |
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| Q |
202 |
ggattaccaagccgtttgttgtacatttctgcatatctgaatggattcagcatttcaaggaaagataatggaagtcttgttgagactacgtatacactgc |
301 |
Q |
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|| |||||||| |||||||||||| ||||| |||| || ||| |||| ||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
2725906 |
ggcttaccaagtcgtttgttgtacgcttctg-atattctaacactttc--cattggaaggaaagataatggaagtattgttgagactacctatacactgc |
2725810 |
T |
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| Q |
302 |
taaatagttcnnnnnnngcaactgctgtggtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaagttggaacaactgttgctca |
401 |
Q |
| |
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| || ||||| |||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||| ||| |
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| T |
2725809 |
tgaacagttctttctttgcaattgctacagtgaattctgaaggcaagctggtttacacttcatggatgaatgggcatcaagttgggacaaccgttgttca |
2725710 |
T |
|
| Q |
402 |
acaaaatgaatgtgatatttatggtttctgtggt |
435 |
Q |
| |
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| ||||||||||||||||||||||||| |||||| |
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| T |
2725709 |
agaaaatgaatgtgatatttatggtttttgtggt |
2725676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 2747593 - 2747516
Alignment:
| Q |
27 |
atgcattccttccaaatatgagcattagcacaaaacaaagaacaggggaaaaagtaaaactcacttcatggaaaactc |
104 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747593 |
atgcattccttccaaatatgagcattagcacaaaccaaagaacaggggaaaaagtaaaactcacttcatggaaaactc |
2747516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 2709604 - 2709408
Alignment:
| Q |
115 |
gagcgtctcaatgctcctgaaatttttgtatggaaccaaacaaaaccttactggcgctcaggtccatttaatggtcaaatgtttattggattaccaagcc |
214 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||| |||| || |||| |
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| T |
2709604 |
gagcgtttcaatgctcctgaaatttttgtatggaaccaaacaaaaccgtattggcgctcaggtccatggaatggtcaagattttcttggtttggcaagta |
2709505 |
T |
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| Q |
215 |
gtttgttgtacatttctgcatatctgaatggattcagcatttcaaggaaagataatggaagtcttgttgagactacgtatacactgctaaatagttc |
311 |
Q |
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|| |||| | ||||||| |||| || || || | |||| |||| |||||||||||||||||||||||| ||| |||||| ||| ||| ||||| |
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| T |
2709504 |
attggttgcctacttctgcaaatctaaaagggtttatcattagaagggaagataatggaagtcttgttgagattacatatacattgccaaacagttc |
2709408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 2726109 - 2726032
Alignment:
| Q |
27 |
atgcattccttccaaatatgagcattagcacaaaacaaagaacaggggaaaaagtaaaactcacttcatggaaaactc |
104 |
Q |
| |
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|||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |
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| T |
2726109 |
atgcattcctcccaaatatgataattagcacaaaccaaagaacaggggaaaaagtaaaatacacttcttggaaaactc |
2726032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 2714635 - 2714565
Alignment:
| Q |
122 |
tcaatgctcctgaaatttttgtatggaaccaaacaaaaccttactggcgctcaggtccatttaatggtcaa |
192 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||||||||| |
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| T |
2714635 |
tcaatgctcctgaaatttttgtatggaaccaaacaaatccatgttggcgctcaggtccatggaatggtcaa |
2714565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 2720719 - 2720642
Alignment:
| Q |
27 |
atgcattccttccaaatatgagcattagcacaaaacaaagaacaggggaaaaagtaaaactcacttcatggaaaactc |
104 |
Q |
| |
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||||| |||| | |||||||| |||||||| || |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
2720719 |
atgcagtcctcctaaatatgacaattagcaccaaccaaaaaacaggggaaaaagtaaaactcacttcttggaaaactc |
2720642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 2714506 - 2714443
Alignment:
| Q |
248 |
tcagcatttcaaggaaagataatggaagtcttgttgagactacgtatacactgctaaatagttc |
311 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||| |||||| ||| | ||||||| |
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| T |
2714506 |
tcagcattacaaggaaagataatggaagtcttgttgagtttacatatacattgccagatagttc |
2714443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2714745 - 2714681
Alignment:
| Q |
40 |
aaatatgagcattagcacaaaacaaagaacaggggaaaaagtaaaactcacttcatggaaaactc |
104 |
Q |
| |
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|||||||| ||||||| || |||| |||||| |||| |||||||||||||||||||||||||| |
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|
| T |
2714745 |
aaatatgataattagcagcaaccaaaaaacaggtgaaagagtaaaactcacttcatggaaaactc |
2714681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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