View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_23 (Length: 436)
Name: NF1129_low_23
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 2259889 - 2260107
Alignment:
| Q |
28 |
caaaaaattctattcnnnnnnntatattcatgtatagtttttcttatagggagtattggatgagcaattcttgcagctccagcagctacaagatgaaacc |
127 |
Q |
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| T |
2259889 |
caaaaaattctattcaaaaaaatatattcatgtatagtttttcttatagggagtattggatgagcaattcttgcagctccagcagctacaagatgaaacc |
2259988 |
T |
|
| Q |
128 |
tcaccaaactttgtctctgaggttgtcaacatttatttccacgaatctgagaagcttctcaggaatctaagagcattgctgtaataatcattcaatctct |
227 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259989 |
tcaccaaactttgtctatgaggttgtcaacatttatttccacgaatctgagaagcttctcaggaatctaagagcattgctgtaataatcattcaatctct |
2260088 |
T |
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| Q |
228 |
tattaatttcctaattaag |
246 |
Q |
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||||||||||||||||||| |
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| T |
2260089 |
tattaatttcctaattaag |
2260107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 308 - 426
Target Start/End: Original strand, 2260169 - 2260287
Alignment:
| Q |
308 |
cgtgaatttattcaggatggagagagagtttatggactataagaaactggggattgatttgaatcagtttatgggaagcagctcaagcattggtgcaaaa |
407 |
Q |
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| T |
2260169 |
cgtgaatttattcaggatggagagagagtttatggactataagaaactggggattgatttgaatcagtttatgggaagcagctcaagcattggtgcaaaa |
2260268 |
T |
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| Q |
408 |
agagtgactaatgtctgtg |
426 |
Q |
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| T |
2260269 |
agagtgactaatgtctgtg |
2260287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 44734137 - 44734008
Alignment:
| Q |
83 |
ttggatgagcaattcttgcagctccagcagctacaagatgaaacctcaccaaactttgtctctgaggttgtcaacatttatttccacgaatctgagaagc |
182 |
Q |
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|||||||||||||| |||||||| || ||||| |||||| | ||||| || ||||| || || || ||||||||||||||||| || || ||||| || | |
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| T |
44734137 |
ttggatgagcaatttttgcagcttcaacagcttcaagatcacacctcccctaacttcgtatccgaagttgtcaacatttattttcatgagtctgaaaaac |
44734038 |
T |
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| Q |
183 |
ttctcaggaatctaagagcattgctgtaat |
212 |
Q |
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| |||| ||||| ||| |||||||||||| |
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| T |
44734037 |
tactcaccaatctcagatcattgctgtaat |
44734008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 44733831 - 44733780
Alignment:
| Q |
364 |
atttgaatcagtttatgggaagcagctcaagcattggtgcaaaaagagtgac |
415 |
Q |
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|||||||||| || || || |||||||||||||||||||| ||||||||||| |
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| T |
44733831 |
atttgaatcaattcattggtagcagctcaagcattggtgctaaaagagtgac |
44733780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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