View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_24 (Length: 434)
Name: NF1129_low_24
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 160035 - 159629
Alignment:
| Q |
17 |
atgatattatttttccctgtgacatgtgaggatcattttgagcaaccagaacacttttatacttgtatcatatcaatatagatggttatttgtgtagtgt |
116 |
Q |
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| T |
160035 |
atgatattatttttccctgtgacatgtgaggatcattttgagcaaccagaacacttttatacttgtatcatatcaatatagatggttatttgtgtagtgt |
159936 |
T |
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| Q |
117 |
atgtaccaattgattacattttagttaggggtgtacactagttgagtcgaacgaactcatttatcttaggaacctaagtcgatgacaccttttcccacta |
216 |
Q |
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| T |
159935 |
atgtaccaattgattacattttagttaggggtgtacactagttgagtcgaccgaactcatttatcttaggaacctaagtcgatgacaccttttcccactt |
159836 |
T |
|
| Q |
217 |
aacgcaattaattttacgagcatcttcactcttctacttaggggtgtacacttgttgagtcgaccgaactcatttatcttgggaatgttttgaaaggtag |
316 |
Q |
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| T |
159835 |
aacgcaatgaattttaggagcatcttcactcttctacttaggggtgtacacatgttgagtcgaccgaactcatttatcttgggaatgttttggaaggtag |
159736 |
T |
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| Q |
317 |
gaaaagatgtgattatcttctcaaatatgtgtaggtgaatgttttgggatgatatcttaagtcggctgggcattactcccgtattttctaatcatagttt |
416 |
Q |
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| T |
159735 |
gaaaagatgtgattatcttctcaaatatgtgtaggtgaatgttttgggatgatatcttaagtcggctgggcattactcccgtattttctaatcatagttt |
159636 |
T |
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| Q |
417 |
gcttcat |
423 |
Q |
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| T |
159635 |
gcttcat |
159629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 151597 - 151370
Alignment:
| Q |
20 |
atattatttttccctgtgacatgtgaggatcattttgagcaaccagaacacttttatacttgtatcatatcaatata--gatggttatttgtgtagtgta |
117 |
Q |
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| T |
151597 |
atattatttttccctgtgacatgtgaggatcattttgagcaaccagaaaactttaatacttgtatcatatcaatatatagatggttatttgtagtgtata |
151498 |
T |
|
| Q |
118 |
tgtaccaattgattacattttagttaggggtgtacactagttgagtcgaacgaactcatttatcttaggaacctaagtcgatgacaccttttcccactaa |
217 |
Q |
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| T |
151497 |
tgtaccgattgattacgttttagttaggggtgtacactagtcgagtcgtccgaactcatttatcttaggaacccaagtcgatgactcctttt-tcactta |
151399 |
T |
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| Q |
218 |
acgcaattaattttacgagcatcttcact |
246 |
Q |
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| T |
151398 |
acgcaatgaattttacgagtatcttcact |
151370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 316 - 416
Target Start/End: Complemental strand, 151322 - 151222
Alignment:
| Q |
316 |
ggaaaagatgtgattatcttctcaaatatgtgtaggtgaatgttttgggatgatatcttaagtcggctgggcattactcccgtattttctaatcatagtt |
415 |
Q |
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||||| ||||||||||||||||||| ||| |||| ||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
151322 |
ggaaaggatgtgattatcttctcaattatttgtaagtgaatgttatggggtgatatcttaggtcggctgggcattactcccatattttctaatcatagtt |
151223 |
T |
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| Q |
416 |
t |
416 |
Q |
| |
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| |
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| T |
151222 |
t |
151222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 151474 - 151427
Alignment:
| Q |
254 |
ttaggggtgtacacttgttgagtcgaccgaactcatttatcttgggaa |
301 |
Q |
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||||||||||||||| || |||||| ||||||||||||||||| |||| |
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| T |
151474 |
ttaggggtgtacactagtcgagtcgtccgaactcatttatcttaggaa |
151427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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