View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_29 (Length: 379)
Name: NF1129_low_29
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 29 - 368
Target Start/End: Original strand, 34577578 - 34577916
Alignment:
| Q |
29 |
agcaaataccgttagtgtacttcttagcaaaaactttacgtatttcnnnnnnnggttacaaaaagtttacgtattttagattatagagatttgtagaagt |
128 |
Q |
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| T |
34577578 |
agcaaataccgttagtgtacttcttagcaaaa-ctttacgtatttctttttttggttacaaaaagtttacgtattttagattatagagatttgtagaagt |
34577676 |
T |
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| Q |
129 |
aacattgattaatttataggaggtacataacattaagaaattggagggtatgcagttcgttgctggcaaatatgtgtcaagttactcaaagtataataaa |
228 |
Q |
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| T |
34577677 |
aacattgattaatttataggaggtacataacattaagaaattggagggtatgcagttcgttgctggcaaatatgtgtcaagttactcaaagtataataaa |
34577776 |
T |
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| Q |
229 |
ttaattaattggaatnnnnnnnggtcatcagcacatgattattggagtgattttggccttcaaatctaagcattttacataaatattattcccacaacaa |
328 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577777 |
ttaattaattggaataaaaaaaggtcatcagcacatgattattggagtgattttggccttcaaatctaagcattttacataaatattattcccacaacaa |
34577876 |
T |
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| Q |
329 |
tccaaaatcacactgctctcaaataacagcgcagattcat |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
34577877 |
tccaaaatcacactgctctcaaataacagcgcagattcat |
34577916 |
T |
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