View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_low_3 (Length: 702)

Name: NF1129_low_3
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_low_3
NF1129_low_3
[»] chr2 (1 HSPs)
chr2 (1-597)||(26376799-26377398)
[»] scaffold1211 (1 HSPs)
scaffold1211 (1-391)||(766-1152)
[»] chr3 (2 HSPs)
chr3 (523-598)||(50063925-50064000)
chr3 (531-591)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (523-593)||(33966650-33966720)
chr1 (523-591)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (523-598)||(25101044-25101119)
chr6 (523-560)||(23890001-23890038)
[»] chr5 (1 HSPs)
chr5 (531-591)||(43281148-43281208)
[»] chr8 (1 HSPs)
chr8 (537-593)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (531-591)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 26376799 - 26377398
Alignment:
Q  1 gtttgctcatccacctacaggtagagcattggctattttcagatcaaaagatgcagctgcaaacgcaatatctgagttgaacaggagatgccttattctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26376799 gtttgctcatccacctacaggtagagcattggctattttcagatcaaaagatgcaggtgcaaacgcaatatctgagttgaacaggagatgccttattctt 26376898  T
Q  101 gaagacgggaggtatttcatttatcactttctttt-ctcttctgctttgttattctgttccgctccagaacttgaataacatccaacacacctcgtacct 199  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26376899 gaagacgggaggtatttcatttatcgctttctttttctcttctgctttgttattctgttccgctccagaacttgaataacatccaacacacctcgtacct 26376998  T
Q  200 cctgaaaatattataaagtagaaaacctacaaatatggacact--gtcccaatttgctgtggtatagttaagcaactatgaaaggtgcagcatatgctta 297  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26376999 cctgaaaatattataaagtagaaaacctacaaatatggacactatgtcccaatttgctgtggtatagttaagcaactatgaaaggtgcagcatatgctta 26377098  T
Q  298 tgggttgtattgtactcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377099 tgggttgtattgtactcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgc 26377198  T
Q  398 acaagaacaaaatgattggttgtcaattgtacacgtctcagacgacacatgggctatagtagnnnnnnnnaatgcaattcttagactagagtaaaaagat 497  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  26377199 acaagaacaaaatgattggttgtcaactgtacacgtctctgacgacacatgggctatagtagttttttttaatgcaattcttagactagagtaaaaagat 26377298  T
Q  498 ttgttttgggtttctaatagtaggaaggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattcc 597  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26377299 ttgttttgggtttctaatagtaggaaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctccaccgtgcttcgacttcattcc 26377398  T

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Target: scaffold1211 (Bit Score: 147; Significance: 4e-77; HSPs: 1)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 766 - 1152
Alignment:
Q  1 gtttgctcatccacctacaggtagagcattggctattttcagatcaaaagatgcagctgcaaacgcaatatctgagttgaacaggagatgccttattctt 100  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||| |||||    
T  766 gtttgctcatctaccgacaggtagagcattggttattttcagatcaaaagatgcagctgaaaatgcaatatctgagttgaccagcagatgccttgttctt 865  T
Q  101 gaagacgggaggtatttcatttatcactttctttt-ctcttctgctttgttattctgttccgctccagaacttgaataacatccaacacacctcgtacct 199  Q
    ||||       ||||||||||||   |||| |||| ||||||| |||||||||||||||| | ||||||||||| |||||||  ||  ||||  ||||||    
T  866 gaag-------gtatttcatttactgctttgtttttctcttctactttgttattctgttctgttccagaacttgcataacatttaatccacccagtacct 958  T
Q  200 cctgaaaatattataaagtagaaaacctacaaatatggacact---gtcccaatttgctgtggtatagttaagcaactatgaaaggtgcagcatatgctt 296  Q
    ||||||||||||||||||| ||| |||||||||||||||||||   ||||||||  ||||  ||||||||| ||||| ||||||||| |  |||||||||    
T  959 cctgaaaatattataaagttgaatacctacaaatatggacacttatgtcccaatg-gctgcagtatagttatgcaaccatgaaaggttccacatatgctt 1057  T
Q  297 atgggttgtattgtactcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaat 391  Q
    | || |||||||||| | |||||||  || ||||||||||| ||||||||||||| ||||| ||| ||||| ||||  ||||| ||| |||||||    
T  1058 acggtttgtattgtatttgaaagtttcttaaacttattgatggtagagactagattttagactagcaaatctgactgcaaagactgttgataaat 1152  T

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Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 523 - 598
Target Start/End: Original strand, 50063925 - 50064000
Alignment:
Q  523 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 598  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  50063925 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccg 50064000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 591
Target Start/End: Original strand, 7227152 - 7227212
Alignment:
Q  531 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 591  Q
    |||||||||| ||||||  ||||||||||| | |||| ||||||| ||| |||||||||||    
T  7227152 gtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactt 7227212  T

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Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 523 - 593
Target Start/End: Original strand, 33966650 - 33966720
Alignment:
Q  523 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 593  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  33966650 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttca 33966720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 50204531 - 50204599
Alignment:
Q  523 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 591  Q
    ||||||| ||||||| |||||||||| || ||| |||| | |||| ||||||| | |||||||||||||    
T  50204531 aggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactt 50204599  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 598
Target Start/End: Complemental strand, 25101119 - 25101044
Alignment:
Q  523 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 598  Q
    ||||||| |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||| ||||    
T  25101119 aggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccg 25101044  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 560
Target Start/End: Complemental strand, 23890038 - 23890001
Alignment:
Q  523 aggatcgtgtgctggctcgtaggatcttacgattctac 560  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  23890038 aggatcgagtgctggctcgtaggatcgtacgattctac 23890001  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 591
Target Start/End: Complemental strand, 43281208 - 43281148
Alignment:
Q  531 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 591  Q
    ||||||| || ||||||| ||||||||||||| |||||||||||| | | |||||||||||    
T  43281208 gtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactt 43281148  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 593
Target Start/End: Complemental strand, 29168612 - 29168556
Alignment:
Q  537 gctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 593  Q
    ||||||||||||  |||||  ||| |||||| ||||||| |||||||||||||||||    
T  29168612 gctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgacttca 29168556  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 591
Target Start/End: Complemental strand, 46082552 - 46082492
Alignment:
Q  531 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 591  Q
    |||||||||| ||||||| ||||||||||  | || | ||||||| |||||||||||||||    
T  46082552 gtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactt 46082492  T

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