View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_33 (Length: 363)
Name: NF1129_low_33
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 96 - 353
Target Start/End: Complemental strand, 33110498 - 33110241
Alignment:
| Q |
96 |
ataattagaataatttaaatgaagagtacaattgaaagatnnnnnnntcagtccaaaatcatgtatctcttttataaataaaatgtgaaaattattcttt |
195 |
Q |
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| T |
33110498 |
ataattagaataatttaaatgaagagtacaattgaaagataaaaaaatcagtccaaaaccatgtatctcttttataaataaaatgtgaaaattattcttt |
33110399 |
T |
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| Q |
196 |
tttatttaattaaataatcaaatttggatagcatgtgaattatcaggctgttgaggatatgtggcgtcttaaatttaattctgtgcaacctcctcataat |
295 |
Q |
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| T |
33110398 |
tttatttaattaaataatcaaatttggatagcatgtgaattatcaggccgttgaggatatgtggcgtcttaaatttaattccatgcaacctcctcataat |
33110299 |
T |
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| Q |
296 |
gtgactccatgctcatagctacttcggttagtggtgctacaaacatggaacgtctgtg |
353 |
Q |
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| T |
33110298 |
gtgactccatgctcatagctacttcggttagtggtgctacaaacatggaacgtatgtg |
33110241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 33110239 - 33110201
Alignment:
| Q |
308 |
tcatagctacttcggttagtggtgctacaaacatggaac |
346 |
Q |
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| T |
33110239 |
tcatagctacttcggttagtggtgctacaaacatggaac |
33110201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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