View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_34 (Length: 357)
Name: NF1129_low_34
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 39077684 - 39077337
Alignment:
| Q |
1 |
agcaagtgcatcaataatcacaaaacaagaacaaattttgaagcatatacattgactcaagtggcatcaaatttcacactacacaaatatcaatatgcat |
100 |
Q |
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| T |
39077684 |
agcaagtgcatcaataatcacaaaacaagaacaaattttgaagcatatacattgactcaagtggcatcaaatttcacactacacaaatatcaatatgcat |
39077585 |
T |
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| Q |
101 |
acgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggagaaat |
200 |
Q |
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| T |
39077584 |
acgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggagaaat |
39077485 |
T |
|
| Q |
201 |
agttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttcga |
300 |
Q |
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| T |
39077484 |
agttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttcga |
39077385 |
T |
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| Q |
301 |
ttatcagcacacacagcaattcaattctatgatgttcaagaccgtctc |
348 |
Q |
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| T |
39077384 |
ttatcagcacacacagcaattcaattctatgatgttcaagaccgtctc |
39077337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 341
Target Start/End: Complemental strand, 30768521 - 30768370
Alignment:
| Q |
190 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
289 |
Q |
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| T |
30768521 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
30768422 |
T |
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| Q |
290 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaaga |
341 |
Q |
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| T |
30768421 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaaga |
30768370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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