View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_39 (Length: 346)
Name: NF1129_low_39
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 32724718 - 32724883
Alignment:
| Q |
81 |
gaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttattt |
180 |
Q |
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| T |
32724718 |
gaaacatgagaagacaagaatgatagagagattatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttattt |
32724817 |
T |
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| Q |
181 |
gggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcattt |
246 |
Q |
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| T |
32724818 |
gggttaacaggctttttagaaaggtgttgaaggtaatggatgttaaaagattctttctcagcattt |
32724883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 32723264 - 32723430
Alignment:
| Q |
82 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttg |
181 |
Q |
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||||||||||||||| ||| |||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32723264 |
aaacatgagaagacaggaaagatagagagatgatgggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttg |
32723363 |
T |
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| Q |
182 |
ggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcattt |
246 |
Q |
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| T |
32723364 |
agttataacatgtttttgagaaaggtgttgaaggtagtggatgttacaagattctttatcagcattt |
32723430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 4001942 - 4002036
Alignment:
| Q |
146 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctca |
240 |
Q |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctca |
4002036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 15719989 - 15720156
Alignment:
| Q |
82 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaa-tttttgttttgtatcaatggtgacacaagttattt |
180 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
15719989 |
aaacatgagaagacaagaaagatagagagatgatgggtgtacaggtttagtagagaaagagtaattttttgttttgtattaatggtgacacaagttattt |
15720088 |
T |
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| Q |
181 |
gggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcattt |
246 |
Q |
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| T |
15720089 |
gggttataacaagtttttgagaaaggtgttgaaggtagtggatgttacaagattctttctcagtattt |
15720156 |
T |
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