View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_4 (Length: 694)
Name: NF1129_low_4
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 32 - 400
Target Start/End: Original strand, 28692272 - 28692640
Alignment:
| Q |
32 |
aaagactttactattaaa-atccattaaattaaatgtaacaacaacactaaaatgttaaaattaaatcaatcaagaaggagaaaataaagatgttttgaa |
130 |
Q |
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| T |
28692272 |
aaagactctactattaaatatccattaaattaaatgta-caacaacactaaaatgttaaaattaaatcaatcaagaaggagaaaataaagatgttttgaa |
28692370 |
T |
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| Q |
131 |
atgtcgaannnnnnngagacaattttgtgctttctcaagaaccaaatcaaccctatcttttctcttattctttcttctactagggcaacgcttgatgaca |
230 |
Q |
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| T |
28692371 |
atgtcgaatttttttgagacaattttgtgctttctcaagaaccaaatcaaccctatcttttctcttattctttcttctactagggcaatgcttgatgaca |
28692470 |
T |
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| Q |
231 |
acactcttgggagattcaagctcagaattttcagcacctttcttaccctccttcattacttcttctctctctggtaaagcaagttgaatactctttatat |
330 |
Q |
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| T |
28692471 |
acactcttgggagattcaagctcagaattttcagcacctttcttaccctccttcattacttcttctctctctggtaaagcaagttgaatactctttatat |
28692570 |
T |
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| Q |
331 |
gctccaagcttgttgattctgcattacaagaatagaataaaacaacctcaaaaaccatgtttagcagcac |
400 |
Q |
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| T |
28692571 |
gctccaagcttgttgattctgcattacaagaatagaataaaacaacctcaaaaaccatgtttcgcagcac |
28692640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 447 - 689
Target Start/End: Original strand, 28692686 - 28692928
Alignment:
| Q |
447 |
ccttcagtatctaagaaagcagtgagggaggtgttgttttgtggaagggggtgagaataggaataagagttttgaagatgagagatgaaagacctaagtt |
546 |
Q |
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| T |
28692686 |
ccttcagtatctaagaaagcagtgagggaggtgttgttttgtggaagggggtgagaataggaataagagttttgaagatgagagatgaaagacctaagtt |
28692785 |
T |
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| Q |
547 |
catgtttgagatagtcatgttgattagggtaaagggtttcaagcatctccaactcttcctttgcttgctctaactccatttaattgggattgattcttcc |
646 |
Q |
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| T |
28692786 |
catgtttgagatagtcatgttgattagggtaaagggtttcaagcatctccaactcttcctttgcttgctctaactccatttaattgtgattgattcttcc |
28692885 |
T |
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| Q |
647 |
actccttttgttttaaatgctcataaattaaaataagattagt |
689 |
Q |
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| T |
28692886 |
actccttttgttttaaatgctcataaattaaaataagattagt |
28692928 |
T |
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