View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_45 (Length: 317)
Name: NF1129_low_45
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 31099883 - 31099750
Alignment:
| Q |
89 |
agaagagtcggatttgaagttcacaaacccatagtcatagagaaatttacacaaggttttgaaccaggcaagtggtgtgttgggtttaggccgtaaataa |
188 |
Q |
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| T |
31099883 |
agaagagtcggatttgaagttcacaaacccatagtcatagagaaatttacacaaggttttgaaccaggcaagtggtgtgttgggtttaggccgtaaataa |
31099784 |
T |
|
| Q |
189 |
actttcgtaggtgacaaatgttgtcatctgtttg |
222 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31099783 |
actttcgtaggtgacaaatgttgtcatctgtttg |
31099750 |
T |
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