View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_46 (Length: 313)
Name: NF1129_low_46
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_46 |
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| [»] scaffold0458 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: scaffold0458 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 4027 - 4248
Alignment:
| Q |
92 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
4126 |
T |
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| Q |
192 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4127 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
4226 |
T |
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| Q |
292 |
aatgcattcaccaagtacctac |
313 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4227 |
aatgcattcaccaagtacctac |
4248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 13345 - 13566
Alignment:
| Q |
92 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13345 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
13444 |
T |
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| Q |
192 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
291 |
Q |
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| T |
13445 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
13544 |
T |
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| Q |
292 |
aatgcattcaccaagtacctac |
313 |
Q |
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|||||||||||||||||||||| |
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| T |
13545 |
aatgcattcaccaagtacctac |
13566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 39449594 - 39449373
Alignment:
| Q |
92 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39449594 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
39449495 |
T |
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| Q |
192 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39449494 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
39449395 |
T |
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| Q |
292 |
aatgcattcaccaagtacctac |
313 |
Q |
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|||||||||||||||||||||| |
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| T |
39449394 |
aatgcattcaccaagtacctac |
39449373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 39459704 - 39459483
Alignment:
| Q |
92 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39459704 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
39459605 |
T |
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| Q |
192 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39459604 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
39459505 |
T |
|
| Q |
292 |
aatgcattcaccaagtacctac |
313 |
Q |
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|||||||||||||||||||||| |
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| T |
39459504 |
aatgcattcaccaagtacctac |
39459483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 39470466 - 39470245
Alignment:
| Q |
92 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470466 |
atgttgttattgctaggagggatatgagcttaaggtgcatggcttgtagggtttatatagatttaagatcaagattttaatttgtcgtattataatcatt |
39470367 |
T |
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| Q |
192 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470366 |
agtgggaatgttggaaagtcaactagtttgttagaatgaatttgaatatattgtctccttgtatctttgatgttgatattgtggctaccgtacgtgaatg |
39470267 |
T |
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| Q |
292 |
aatgcattcaccaagtacctac |
313 |
Q |
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|||||||||||||||||||||| |
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| T |
39470266 |
aatgcattcaccaagtacctac |
39470245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 24062836 - 24062868
Alignment:
| Q |
250 |
ttgtatctttgatgttgatattgtggctaccgt |
282 |
Q |
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| T |
24062836 |
ttgtatctttgatgttgatattttggctaccgt |
24062868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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