View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_low_48 (Length: 309)

Name: NF1129_low_48
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_low_48
NF1129_low_48
[»] chr4 (4 HSPs)
chr4 (38-269)||(42535930-42536157)
chr4 (39-269)||(42530214-42530454)
chr4 (265-297)||(314241-314273)
chr4 (265-297)||(6554459-6554491)
[»] scaffold0211 (1 HSPs)
scaffold0211 (265-297)||(18589-18621)
[»] scaffold0114 (1 HSPs)
scaffold0114 (265-297)||(36958-36990)
[»] chr3 (1 HSPs)
chr3 (265-297)||(50241398-50241430)
[»] chr2 (1 HSPs)
chr2 (265-297)||(31965977-31966009)
[»] chr1 (1 HSPs)
chr1 (265-297)||(45918364-45918396)
[»] chr8 (1 HSPs)
chr8 (265-297)||(41527166-41527198)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 38 - 269
Target Start/End: Complemental strand, 42536157 - 42535930
Alignment:
Q  38 caacaatcacaagaaaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacat 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42536157 caacaatcacaagacaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcattagttggttggagttggaccagacat 42536058  T
Q  138 gaacatgaccatgtctgttacccgtataaatcgtgttcctggcggtcttcattataatagagggtggttataccctccaaagcctctgtaactgacannn 237  Q
    ||||||||||||||||||||||||||||||||| ||||    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||       
T  42536057 gaacatgaccatgtctgttacccgtataaatcgcgttc----cggtcttcatcataatagagggtggttataccctccaaagcctctgtaactgacattt 42535962  T
Q  238 nnnnagatgaatcaatgcactccaaagctttt 269  Q
        ||||||||||||||||||||||||||||    
T  42535961 ttttagatgaatcaatgcactccaaagctttt 42535930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 42530454 - 42530214
Alignment:
Q  39 aacaatcacaagaaaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatg 138  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42530454 aacaatcacatgacaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatg 42530355  T
Q  139 aacatgaccatgtctgttacccgtataaatcgtgttcctggcggtcttca--------ttataatagagggtggttataccctccaaagcct------ct 224  Q
    |||| ||||||||||||||||||||||||||| ||||    |||||||||        | ||||||||||||||||||||||||||||||||      ||    
T  42530354 aacaagaccatgtctgttacccgtataaatcgcgttc----cggtcttcatcataaattcataatagagggtggttataccctccaaagcctctgggact 42530259  T
Q  225 gtaactgacannnnnnnagatgaatcaatgcactccaaagctttt 269  Q
    | ||||||||       ||||||||||||||||||||||||||||    
T  42530258 ggaactgacattatttgagatgaatcaatgcactccaaagctttt 42530214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 314241 - 314273
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    |||||||||||||||||||||||||||||||||    
T  314241 ctttttaaacatatggtgtcttcatttgatatt 314273  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 6554459 - 6554491
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    ||||||||| |||||||||||||||||||||||    
T  6554459 ctttttaaatatatggtgtcttcatttgatatt 6554491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 18621 - 18589
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    |||||||||||||||||||||||||||||||||    
T  18621 ctttttaaacatatggtgtcttcatttgatatt 18589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 36958 - 36990
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    |||||||||||||||||||||||||||||||||    
T  36958 ctttttaaacatatggtgtcttcatttgatatt 36990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 50241398 - 50241430
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    |||||||||||||||||||||||||||||||||    
T  50241398 ctttttaaacatatggtgtcttcatttgatatt 50241430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 31966009 - 31965977
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    |||||||||||||||||||||||||||||||||    
T  31966009 ctttttaaacatatggtgtcttcatttgatatt 31965977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 45918396 - 45918364
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    |||||||||||||||||||||||||||||||||    
T  45918396 ctttttaaacatatggtgtcttcatttgatatt 45918364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 41527198 - 41527166
Alignment:
Q  265 ctttttaaacatatggtgtcttcatttgatatt 297  Q
    ||||||||| |||||||||||||||||||||||    
T  41527198 ctttttaaatatatggtgtcttcatttgatatt 41527166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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