View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_5 (Length: 656)
Name: NF1129_low_5
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_5 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 30 - 641
Target Start/End: Original strand, 47900418 - 47901029
Alignment:
| Q |
30 |
atgtccaccaccagtatcactcatgagaatcaacacattttttgttctttctgctccaatttccatgagttccatgccaacttcattatcttcattgata |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47900418 |
atgtccaccaccagtatcactcatgagaatcaacacattttttgttctttctgctccaatttccatgagttccatgccaccttcattatcttcattgata |
47900517 |
T |
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| Q |
130 |
gaactttgagactcactacgtttcttgaagcttccactgcctttaatggaatacgattttccaaacactttttccactatagactttcttagtgttcttg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900518 |
gaactttgagactcactacgtttcttgaagcttccactgcctttaatggaatacgattttccaaacactttttccactatagactttcttagtgttcttg |
47900617 |
T |
|
| Q |
230 |
gtgacacaaccttagagctttccggtgacacgtatgaaacctccatgtggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaagg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900618 |
gtgacacaaccttagagctttccggtgacacgtatgaaacctccatgtggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaagg |
47900717 |
T |
|
| Q |
330 |
tttctccggcagagagaggtgnnnnnnntgattggtgtggaagtgttgtcgaaatacgaggaagaattagagagaagaagttaacaagaacaacgtttgt |
429 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47900718 |
tttctccggcagagagaggtgaaaaaaatgattggtgtggaagtgttgtcgaaatacgaggaagaattagagagaagaagttagcaagaacaacgtttgt |
47900817 |
T |
|
| Q |
430 |
tttaatgttgtggtgatgctggaataatgctatggaatttttgttgaagcttagttggattttgaaccgttagattgttacttgtgatggaatgttctaa |
529 |
Q |
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| T |
47900818 |
tttaatgttgtggtgatgctggaattatgctatggaatttttgttgaagcttagttggattttgaaccgttagattgttacttgtgatggaatgttctaa |
47900917 |
T |
|
| Q |
530 |
acggaagattcgaatctttgcgttgttgttattttgtttgaaaattgaaagtgttagttgctttgctgagttgtttaatcattcgtggggttccagtttt |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900918 |
acggaagattcgaatctttgcgttgttgttattttgtttgaaaattgaaagtgttagttgctttgctgagttgtttaatcattcgtggggttccagtttt |
47901017 |
T |
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| Q |
630 |
gctgttgtgtcc |
641 |
Q |
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| T |
47901018 |
gctgttgtgtcc |
47901029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 141 - 337
Target Start/End: Complemental strand, 23554623 - 23554415
Alignment:
| Q |
141 |
ctcactacgtttcttgaagcttccactgcctttaatggaatacgattttccaaacactttttccactatagactttcttagtgttcttggtgacacaacc |
240 |
Q |
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||||||| | ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
23554623 |
ctcactatgcttcttgaagcttccactccctctaatgaaatacgattttccaaacactttttccactatagacttacttggtgttcttggtgatacaacc |
23554524 |
T |
|
| Q |
241 |
ttagagctttccggtgacacgtatgaaacctccat------------gtggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaag |
328 |
Q |
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| T |
23554523 |
ttagagctttctcgtgtaacatatgaaacctccatgtgtccgaaaaagtggacacacctaacagtcaaacaaaccttgttgccgccaccatcggaacaag |
23554424 |
T |
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| Q |
329 |
gtttctccg |
337 |
Q |
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| T |
23554423 |
atttctccg |
23554415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 141 - 337
Target Start/End: Complemental strand, 6744 - 6536
Alignment:
| Q |
141 |
ctcactacgtttcttgaagcttccactgcctttaatggaatacgattttccaaacactttttccactatagactttcttagtgttcttggtgacacaacc |
240 |
Q |
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||||||| | ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
6744 |
ctcactatgcttcttgaagcttccactccctctaatgaaatacgattttccaaacactttttccactatagacttacttggtgttcttggtgatacaacc |
6645 |
T |
|
| Q |
241 |
ttagagctttccggtgacacgtatgaaacctccat------------gtggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaag |
328 |
Q |
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||||||||||| ||| || |||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||| |
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| T |
6644 |
ttagagctttctcgtgtaacatatgaaacctccatgtgtccgaaaaagtggacacacctaacagtcaaacaaaccttgttgccgccaccatcggaacaag |
6545 |
T |
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| Q |
329 |
gtttctccg |
337 |
Q |
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|||||||| |
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| T |
6544 |
atttctccg |
6536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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