View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_50 (Length: 306)
Name: NF1129_low_50
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 61 - 306
Target Start/End: Complemental strand, 54075812 - 54075567
Alignment:
| Q |
61 |
ccacccttgtcctcccgcggtaaaattgatttcaacgaaggtaattcatttgaattgaagtggaacccattatttctccaagagggtaaatacatgaatt |
160 |
Q |
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| T |
54075812 |
ccacccttgtcctcccgcggtaaaattgatttcaacgaaggtaattcatttgaattgaagtggaacccattatttctccaagagggtaaatacatgaatt |
54075713 |
T |
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| Q |
161 |
catcaacatccacatacatcatccaagtgcataatcctttggattttgagtacaaaatactgtgagagaatccagcttcttgagtcttaggccaaatcca |
260 |
Q |
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| T |
54075712 |
catcaacatccacatacatcatccaagtgcataatcctttggattttgagtacaaaatactgtgtgagaatccagcttcttgagtcttaggccaaatcca |
54075613 |
T |
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| Q |
261 |
aagcaacgtgcttatattataacccacttcacaaagctccttaatt |
306 |
Q |
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| T |
54075612 |
aagcaacgtgcttatattataaccctcttcacgaagctccttaatt |
54075567 |
T |
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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 39078223 - 39078172
Alignment:
| Q |
7 |
tgaaccccatgtgacatacatcactgatttcaatgtcctattctagtttgtt |
58 |
Q |
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| T |
39078223 |
tgaaccccatgtgacatacatcactgatttcaatgtcctattctagtttgtt |
39078172 |
T |
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