View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_53 (Length: 294)
Name: NF1129_low_53
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 8269321 - 8269558
Alignment:
| Q |
22 |
catcatcaccaattcaccatcactaattagtgctctagtcaaaatcacttcctcacaaacaaaaccctattttgatttcttgtttatttcttgatttccc |
121 |
Q |
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| T |
8269321 |
catcatcaccaattcaccatcactaatta-tgctctagtcaaaatcacttcctcacaaacaaaacactattttgatttcttgtttatttcttgatttccc |
8269419 |
T |
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| Q |
122 |
atattttcaaatccttgacttccttctatgttattgttaatatagatcatgtgggattcaagacatttaggaactgttattgactttggctcccaaatgc |
221 |
Q |
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| T |
8269420 |
atatgttcaaatccttgacttccttcta------ttttaatatagatcatgtgggattcaagacatttaggaactgttattgactttggctcccaaatgc |
8269513 |
T |
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| Q |
222 |
gtgcaatgacggttgaagatcggccacaactatgtggaacaacat |
266 |
Q |
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| T |
8269514 |
atgcaatgacggttgaagatcggccacaactatgtggaacaacat |
8269558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 8287767 - 8287849
Alignment:
| Q |
176 |
gattcaagacatttaggaactgttattgactttggctcccaaatgcgtgcaatgacggttgaagatcggccacaactatgtgga |
259 |
Q |
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| T |
8287767 |
gattcaagacatttagggacttttgttta-tttggctctcatatgcgtgcaatgacagtcgaagatcagtcacaactatgtgga |
8287849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 1250555 - 1250799
Alignment:
| Q |
22 |
catcatcaccaattcaccatcactaattagtgctctagtca--------aaatcacttcctcacaaacaaaaccctattttgatttcttgtttatttctt |
113 |
Q |
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| T |
1250555 |
catcatcaccaattcaccatcactatttagtgctctagtccctccatccaaatcacttcctcacaaacaaaaccttttttt---tttttgtttatttctt |
1250651 |
T |
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| Q |
114 |
gatttcccatattttcaaatccttgacttccttctatgttattgttaatatagatcatgtgggattcaagacatttaggaactgttattgactttggctc |
213 |
Q |
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| T |
1250652 |
gatttcacatatgttcaaatccttgatatccttctatgttaatatta-----gatcatgtgtgattcaagacatttaagaactgttattgactttggctc |
1250746 |
T |
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| Q |
214 |
ccaaatgcgtgcaatgacggttgaagatcggccacaactatgtggaacaacat |
266 |
Q |
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| T |
1250747 |
ctaaatgtgtgcaatggcgctcgaagatcggccacaactatgtggagcaacat |
1250799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 20507386 - 20507330
Alignment:
| Q |
160 |
aatatagatcatgtgggattcaagacatttaggaactgttattgactttggctccca |
216 |
Q |
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| T |
20507386 |
aatataggtcaggtgggattcaagacatttaggaactgatgttgactttggctccca |
20507330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 25030954 - 25030986
Alignment:
| Q |
184 |
acatttaggaactgttattgactttggctccca |
216 |
Q |
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| T |
25030954 |
acatttaggaactgttgttgactttggctccca |
25030986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 17773058 - 17773017
Alignment:
| Q |
175 |
ggattcaagacatttaggaactgttattgactttggctccca |
216 |
Q |
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| T |
17773058 |
ggattcgagacatttaggaactattgttgactttggctccca |
17773017 |
T |
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