View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1129_low_56 (Length: 293)
Name: NF1129_low_56
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 42428037 - 42428221
Alignment:
| Q |
54 |
agctgttgccactggtatatctgatctcatctatgaatcatccaaaacaccagctgctgctgagcctgatgcccttgatgatgacctcgtaaatgcttgg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42428037 |
agctgttgccactggtatatctgatctcatctatgaatcatccaaaacaccagctgctgctgagcctgatgcccttgatgatgacctcgtaaatgcttgg |
42428136 |
T |
|
| Q |
154 |
gcagcaaaccttggtgatgatacacccgcaatgaatagggtatgaatttgttaatttattgattttatgtctttttatttccttc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42428137 |
gcagcaaaccttggtgatgatacacccgcaatgaatagggtatgaatttgttaatttattgattttatgtctttttatttccttc |
42428221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University