View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1129_low_6 (Length: 655)
Name: NF1129_low_6
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_6 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 517 - 655
Target Start/End: Original strand, 39299562 - 39299700
Alignment:
| Q |
517 |
cccacattgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctcggccacaacttgtcctgt |
616 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39299562 |
cccacatcgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctctgccacaacttgtcctgt |
39299661 |
T |
|
| Q |
617 |
tcccattcctctgttcatttctttcacatgtggtattcc |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39299662 |
tcccattcctctgttcatttctttcacatgtggtgttcc |
39299700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 39299046 - 39299171
Alignment:
| Q |
1 |
tctccgccacaggggtagcatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttcataaccttgttgtgttttctcaagagttgc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39299046 |
tctccgccacaggggtaacatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttcataaccttgttgtgttttctcaacagttgc |
39299145 |
T |
|
| Q |
101 |
atctttggcttgtgctgctttctcca |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39299146 |
atctttggcttgtgctgctttctcca |
39299171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 318 - 426
Target Start/End: Original strand, 39299363 - 39299471
Alignment:
| Q |
318 |
tgttcagcaccactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagctacactctttcccaagattacaccttcatttt |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39299363 |
tgttcagcagcactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagcaacactctttcccaagattacaccttcatttt |
39299462 |
T |
|
| Q |
418 |
caccaccaa |
426 |
Q |
| |
|
||||||||| |
|
|
| T |
39299463 |
caccaccaa |
39299471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 39299247 - 39299332
Alignment:
| Q |
202 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299247 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
39299332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University