View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_67 (Length: 270)
Name: NF1129_low_67
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_67 |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 1220099 - 1219874
Alignment:
| Q |
15 |
aacgacatcgaaaataatgttgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggcg |
114 |
Q |
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| T |
1220099 |
aacgacatcgaaaataatgttgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggtg |
1220000 |
T |
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| Q |
115 |
atcaacaagttgtgcctggcatggaaaaagatggaacaattagtgaagattcaattggagttccacgtgagactttaactaaagtgccacgcaagacatt |
214 |
Q |
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| T |
1219999 |
atcaacaagttgtgcctggcatggaaaaagatggaacaattagtgaagattcaattggagttccacgtgagactttaactaaagtgccacgcaagacatt |
1219900 |
T |
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| Q |
215 |
aaccaatttgcatgtggatcatcttt |
240 |
Q |
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| T |
1219899 |
aaccaatttgcatgtggatcatcttt |
1219874 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 33362254 - 33362347
Alignment:
| Q |
35 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggcgatcaacaagttgtg |
128 |
Q |
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| T |
33362254 |
tgatttaatgataattggtgaaataaatcgtaaacgtcataaggggaaggcacttgaaaccattcatgagggttacggtgatcaacaagttgtg |
33362347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 2004641 - 2004713
Alignment:
| Q |
168 |
attggagttccacgtgagactttaactaaagtgccacgcaagacattaaccaatttgcatgtggatcatcttt |
240 |
Q |
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| T |
2004641 |
attggagctccacgtgagactttaactgcagtgccatgcgagacattaacggatttgcatgtggatcatcttt |
2004713 |
T |
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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 41441088 - 41441181
Alignment:
| Q |
35 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggcgatcaacaagttgtg |
128 |
Q |
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| T |
41441088 |
tgatttaatggtacttggagaaataagtcgtaaacgtagcaaggggaaggctcttgaagccattcgtgagggttattgtgatcaacaagttgtg |
41441181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 41431025 - 41431095
Alignment:
| Q |
35 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagg |
105 |
Q |
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| T |
41431025 |
tgatttaatggtaattggtgaaataagtcgtaaacgtaaaaaggggaagacacttgaagccattcatgagg |
41431095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 13898 - 13828
Alignment:
| Q |
35 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagg |
105 |
Q |
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| T |
13898 |
tgatttaatggtaattggtgaaataagtcgtaaacgtaaaaaggggaagacacttgaagccattcatgagg |
13828 |
T |
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