View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_68 (Length: 260)
Name: NF1129_low_68
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_68 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 32724253 - 32724478
Alignment:
| Q |
36 |
tatagagagatatcaaagaggggatagagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaataaagaattttcactt |
135 |
Q |
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| T |
32724253 |
tatagagagatatcagagaggggatagagattcatgagtataaattttggttccctatattaactttcttctggtttctttcaataaagaattttcactt |
32724352 |
T |
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| Q |
136 |
taactattatttgttggtgatacaccttcaacattgatggtttacattgtcaatttctaattgaagggacaaaagtcatctaac-gaaacataggttaat |
234 |
Q |
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| T |
32724353 |
tcactattatttgttggtgatacaccttcaacattgatggtttacattgccaatttctaattgaagggacaaaagtcatctaacggaaacataagttaat |
32724452 |
T |
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| Q |
235 |
tgaaaaaagtgaaatcacttacagaa |
260 |
Q |
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| T |
32724453 |
tgaaaaaagtgaaatcacttacagaa |
32724478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 4001641 - 4001789
Alignment:
| Q |
61 |
agagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaa---------taaagaattttcactttaactattatttgttg |
151 |
Q |
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| T |
4001641 |
agagattcatgactataaattttagttctctatgttaacatccttctggtttctttcaacttttttatttaagaattttcacttttactattatttgttg |
4001740 |
T |
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| Q |
152 |
gtgatacaccttcaacattgatggtttaca-ttgtcaatttctaattga |
199 |
Q |
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| T |
4001741 |
gttatacaccttcaatattgatggtttacatttgtcagtttctaattga |
4001789 |
T |
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