View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_low_72 (Length: 255)

Name: NF1129_low_72
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_low_72
NF1129_low_72
[»] chr3 (2 HSPs)
chr3 (19-97)||(20385177-20385255)
chr3 (179-255)||(20385337-20385413)
[»] chr4 (1 HSPs)
chr4 (21-58)||(19312956-19312993)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 20385177 - 20385255
Alignment:
Q  19 agacgcactttcctcctccccaagtcaaggcatacagttttctttgtttcttttaaacaaaccctaatcccagtcctat 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20385177 agacgcactttcctcctccccaagtcaaggcatacagttttctttgtttcttttaaacaaaccctaatcccaatcctat 20385255  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 20385337 - 20385413
Alignment:
Q  179 tattccaaaaaacataaaaccctagccactgacgaccgcaatttttccctagcttcttcagtttcagttttatttct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20385337 tattccaaaaaacataaaaccctagccactgacgaccgcaatttttccctagctttttcagtttcagttttatttct 20385413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 19312993 - 19312956
Alignment:
Q  21 acgcactttcctcctccccaagtcaaggcatacagttt 58  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  19312993 acgcgctttcctcctccccaagccaaggcatacagttt 19312956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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