View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1129_low_80 (Length: 251)
Name: NF1129_low_80
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_80 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] scaffold0225 (1 HSPs) |
| | |
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| [»] scaffold0008 (1 HSPs) |
| |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 6457127 - 6456887
Alignment:
| Q |
11 |
cacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccact |
110 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |||| | |||||||||||||| |
|
|
| T |
6457127 |
cacagaatttaaataattaagatcaattgaatcatatgctttttcaaaatcaactttgaacaataacaaatcccttttcatgcgtttagcttcatccaca |
6457028 |
T |
|
| Q |
111 |
acttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagaccaattactacacgtaatcgat |
210 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||| || |||||||| |
|
|
| T |
6457027 |
acttcattcgcaataaggatgccatccagaatctgtttgccacgaacaaaagctgattgagtatcggacaccaccaaaccaattactaaacataatcgat |
6456928 |
T |
|
| Q |
211 |
ttgcaagaacctttgccaacaccttatacatgcaacccact |
251 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6456927 |
ttgcaagaatctttgccaacaccttatacatgcaacccact |
6456887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 8750522 - 8750343
Alignment:
| Q |
5 |
cagcaccacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttca |
104 |
Q |
| |
|
||||| ||| ||||| |||||||| ||||| | |||||||||||| || || ||||||||||| |||| ||| || || || | ||| | ||||||||| |
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|
| T |
8750522 |
cagcatcacggaatttaaataattgagatccaccgaatcatatgccttctcgaaatcaactttcaacattaacaattctttgttcatacgtttagcttca |
8750423 |
T |
|
| Q |
105 |
tccactacttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccac |
184 |
Q |
| |
|
|| || || ||||| || ||||| |||||||| ||||||||||| ||| | || || ||| | |||||||| |||||||| |
|
|
| T |
8750422 |
tcgacaacctcatttgcaataagtatgccatcaagaatctgtttaccacgcacgaaagctaactgagtatctgacaccac |
8750343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 32217459 - 32217500
Alignment:
| Q |
200 |
acgtaatcgatttgcaagaacctttgccaacaccttatacat |
241 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
32217459 |
acgtagtcgatttgcaagaacatttgccaacactttatacat |
32217500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 43449896 - 43449863
Alignment:
| Q |
46 |
atgctttttcaaaatcaactttgaacaataataa |
79 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
43449896 |
atgctttttcaaaatcaactttaaacaataataa |
43449863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 45703222 - 45703462
Alignment:
| Q |
11 |
cacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccact |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||| | ||| |||||||||| |
|
|
| T |
45703222 |
cacagaatttaaataattaagatcaatcgaatcatatgctatttcaaaatcaactttgaacaataacaaattctttttcatgcgtttatcttcatccaca |
45703321 |
T |
|
| Q |
111 |
acttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagaccaattactacacgtaatcgat |
210 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
45703322 |
acttcattcgcaataagaatgtcatccagaatctgtttgccatgaacaaacgttgattgagtatcggacaccaccaaaccaattactaaacgtaatcgat |
45703421 |
T |
|
| Q |
211 |
ttgcaagaacctttgccaacaccttatacatgcaacccact |
251 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
45703422 |
ttgcaagaatctttgctaacaccttatacatgcaacccact |
45703462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 45470198 - 45470436
Alignment:
| Q |
11 |
cacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccact |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| | |||||||||||||| |
|
|
| T |
45470198 |
cacagaatttaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataacaaatcttttttcatgcgtttagcttcatccaca |
45470297 |
T |
|
| Q |
111 |
acttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagaccaattactacacgtaatcgat |
210 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
45470298 |
acttccttcgcaataagaatgccatccagaatctatttgccatgaacaaacgctgattgagtatcggacaccaccaaaccaattactaaacgcaatcgat |
45470397 |
T |
|
| Q |
211 |
ttgcaagaacctttgccaacaccttatacatgcaaccca |
249 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
45470398 |
ttgcaagaatctttgctaaccccttatacatgcaaccca |
45470436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 24219444 - 24219408
Alignment:
| Q |
39 |
gaatcatatgctttttcaaaatcaactttgaacaata |
75 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
24219444 |
gaatcatacgctttttcgaaatcaactttgaacaata |
24219408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 17189331 - 17189567
Alignment:
| Q |
15 |
gaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccactactt |
114 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||| || |||||||||| |||| | ||||| |||||||| || | |
|
|
| T |
17189331 |
gaattcaaataattcaaatcaatcgaatcataagccttttcaaaatcaactttgaacaacaacaaatcctttttcatgcgtttagcctcatccaccacct |
17189430 |
T |
|
| Q |
115 |
cattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagaccaattactacacgtaatcgatttgc |
214 |
Q |
| |
|
|||| || |||||||||||||| | ||||||||||||| ||||||| || || |||||||| |||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
17189431 |
catttgcaataagaatgccatccataatctgtttgccacgaacaaaagcagactgagtatcggacaccaccaaaccaattactaaacgtaatcgatttgc |
17189530 |
T |
|
| Q |
215 |
aagaacctttgccaacaccttatacatgcaacccact |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17189531 |
aagaatctttgccaacaccttatacatgcaacccact |
17189567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 28049342 - 28049189
Alignment:
| Q |
31 |
gatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccactacttcattcgcgataagaat |
130 |
Q |
| |
|
|||||| ||| || ||||| |||||||||||||| || |||||||| || ||||| | |||| | ||||| ||||| ||||| || || || || ||||| |
|
|
| T |
28049342 |
gatcaaccgagtcgtatgccttttcaaaatcaaccttaaacaataacaactccttatgcatgcgtttagcctcatcgactacctcgtttgcaatgagaat |
28049243 |
T |
|
| Q |
131 |
gccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccac |
184 |
Q |
| |
|
|||||| ||| | ||||||||| | ||||| || || ||||| ||||||||||| |
|
|
| T |
28049242 |
gccatcaagactttgtttgccacggacaaaagcagactgagtgtccgacaccac |
28049189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 14551561 - 14551706
Alignment:
| Q |
39 |
gaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccactacttcattcgcgataagaatgccatcta |
138 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||| || || || | || || | || ||||| ||| | ||||| ||||||||||| ||||| | |
|
|
| T |
14551561 |
gaatcataagctttttcaaaatcaactttaaataatagcaattctttgttcagacgcctcgcctcatcaactgcctcattagcgataagaataccatcaa |
14551660 |
T |
|
| Q |
139 |
gaatctgtttgccatgaacaaatgctgattgagtatccgacaccac |
184 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||| ||||| |
|
|
| T |
14551661 |
gaatctgtttgccactcacaaaagctgattgagaatccgaaaccac |
14551706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 17536678 - 17536711
Alignment:
| Q |
39 |
gaatcatatgctttttcaaaatcaactttgaaca |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
17536678 |
gaatcatatgctttttcaaaatccactttgaaca |
17536711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 19308220 - 19308175
Alignment:
| Q |
42 |
tcatatgctttttcaaaatcaactttgaacaataataaatcctttt |
87 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||| |||| |
|
|
| T |
19308220 |
tcatatgctttttcaaaatcaactttaaacagtaacaaatcttttt |
19308175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 17698067 - 17698308
Alignment:
| Q |
6 |
agcaccacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcat |
105 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||| ||||| || ||||| |||||||||||||||| ||||||||| || | || |||| ||||||| |
|
|
| T |
17698067 |
agcatcacagaattcagataattgagatcaatcgagtcataagccttttcgaaatcaactttgaacagtaataaatctttcttcagacgctttgcttcat |
17698166 |
T |
|
| Q |
106 |
ccactacttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagac-caattacta-cacgt |
203 |
Q |
| |
|
| ||||| ||||| || |||||||||||||| ||||| |||||||| ||||| || |||||| |||| |||||||| || ||| | || |||| |
|
|
| T |
17698167 |
cgactacctcattagcaataagaatgccatcaagaatttgtttgcctctcacaaaagcggattgattatcagacaccacataactcaa--agtagaacgt |
17698264 |
T |
|
| Q |
204 |
aatcgatttgcaagaacctttgccaacaccttatacatgcaacc |
247 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
17698265 |
agtcgatttgcaagaacctttgccaacactttatacatacaacc |
17698308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 17947815 - 17947960
Alignment:
| Q |
6 |
agcaccacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcat |
105 |
Q |
| |
|
|||| |||| |||||| || ||||||||||| ||| ||||| || ||||| |||||||||||||||||||||||||| || | || |||| ||||||| |
|
|
| T |
17947815 |
agcatcacataattcagatgattaagatcaaccgagtcataagccttttcgaaatcaactttgaacaataataaatctttcttcaaacgctttgcttcat |
17947914 |
T |
|
| Q |
106 |
ccactacttcattcgcgataagaatgccatctagaatctgtttgcc |
151 |
Q |
| |
|
| ||||| ||||| || |||||||||||||| ||||| |||||||| |
|
|
| T |
17947915 |
cgactacctcatttgcaataagaatgccatcaagaatttgtttgcc |
17947960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 21823254 - 21823102
Alignment:
| Q |
31 |
gatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccactacttcattcgcgataagaat |
130 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| || || | |||||| || ||||| ||| | |||| ||||| || || ||||| || |||||||| |
|
|
| T |
21823254 |
gatcaatcgagtcataggccttttcaaaatcaaccttaaaaagtaataattctttttc-atgcgtctagcctcatcaacaacctcattagcaataagaat |
21823156 |
T |
|
| Q |
131 |
gccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccac |
184 |
Q |
| |
|
||||| ||||| ||||| || ||||||| ||||| |||| |||||||||||| |
|
|
| T |
21823155 |
accatcaagaatttgtttacctcgaacaaaagctgactgagcatccgacaccac |
21823102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 17963978 - 17964025
Alignment:
| Q |
200 |
acgtaatcgatttgcaagaacctttgccaacaccttatacatgcaacc |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
17963978 |
acgtagtcgatttgcaagaacctttgccaacactttatacatacaacc |
17964025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 11978148 - 11978103
Alignment:
| Q |
206 |
tcgatttgcaagaacctttgccaacaccttatacatgcaacccact |
251 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
11978148 |
tcgatttgcaagaattttcgccaacaccttatacatacaacccact |
11978103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 2856147 - 2856388
Alignment:
| Q |
6 |
agcaccacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcat |
105 |
Q |
| |
|
|||| |||| |||||| |||||||||||||| ||| ||||| || ||||| ||||||||||||||||||||||||| || | || |||| ||||||| |
|
|
| T |
2856147 |
agcatcacaaaattcagataattaagatcaaccgagtcataagccttttcgaaatcaactttgaacaataataaatttttcttcaaacgctttgcttcat |
2856246 |
T |
|
| Q |
106 |
ccactacttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagac-caattactaca-cgt |
203 |
Q |
| |
|
| ||||| ||||| || |||||||||||||| ||||| |||||||| ||||| || |||||| |||| |||||||| || ||| | || | ||| |
|
|
| T |
2856247 |
cgactacctcatttgcaataagaatgccatcaagaatttgtttgcctctcacaaaagcggattgattatcagacaccacataactcaa--aatagaccgt |
2856344 |
T |
|
| Q |
204 |
aatcgatttgcaagaacctttgccaacaccttatacatgcaacc |
247 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2856345 |
agtcgatttgcaagaacctttgccaacactttatacatacaacc |
2856388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 16479656 - 16479808
Alignment:
| Q |
31 |
gatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcatccactacttcattcgcgataagaat |
130 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| || || | |||||| || ||||| ||| | |||| ||||| || || ||||| || |||||||| |
|
|
| T |
16479656 |
gatcaatcgagtcataggccttttcaaaatcaaccttaaaaagtaataattctttttc-atgcgtctagcctcatcaacaacctcattagcaataagaat |
16479754 |
T |
|
| Q |
131 |
gccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccac |
184 |
Q |
| |
|
||||| ||||| ||||| || ||||||| ||||| |||| |||||||||||| |
|
|
| T |
16479755 |
accatcaagaatttgtttacctcgaacaaaagctgactgagcatccgacaccac |
16479808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 32198700 - 32198739
Alignment:
| Q |
33 |
tcaatcgaatcatatgctttttcaaaatcaactttgaaca |
72 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
32198700 |
tcaatagaatcatatgctttttcaaaatcaaccttgaaca |
32198739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 8306627 - 8306868
Alignment:
| Q |
6 |
agcaccacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcat |
105 |
Q |
| |
|
|||| ||| |||||||||||||||||||| | ||| ||||| || ||||||||||| ||||||||||||||||| || |||| | |||| ||||||| |
|
|
| T |
8306627 |
agcatcactgaattcaaataattaagatctaccgagtcataagccttttcaaaatcgactttgaacaataataattcttttttctgacgctttgcttcat |
8306726 |
T |
|
| Q |
106 |
ccactacttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagaccaattactacacgtaa |
205 |
Q |
| |
|
| || || ||||| || |||||||||||||| ||||| ||| | || | ||||| ||||| ||| |||| |||||||| || | | |||||| |
|
|
| T |
8306727 |
caacaacctcatttgcaataagaatgccatcaagaatttgtctaccccgcacaaaagctgactgattatcagacaccacataactcaagatagaacgtaa |
8306826 |
T |
|
| Q |
206 |
tcgatttgcaagaacctttgccaacaccttatacatgcaacc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8306827 |
acgatttgcaagaacctttgccaacactttatacatacaacc |
8306868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 21311839 - 21311598
Alignment:
| Q |
6 |
agcaccacagaattcaaataattaagatcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatccttttccatgtgcttagcttcat |
105 |
Q |
| |
|
|||| |||| ||| ||||||||| ||||||| ||| ||||| || ||||| |||||||||||||||||||||||||| || | | | || |||||| |
|
|
| T |
21311839 |
agcatcacataatgcaaataattgagatcaaccgagtcataagccttttcgaaatcaactttgaacaataataaatctttcttcgaacgttttgcttcac |
21311740 |
T |
|
| Q |
106 |
ccactacttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagaccaattactacacgtaa |
205 |
Q |
| |
|
| ||||| ||||| || |||||||||||||| ||||| |||||||| ||||| || |||||| |||| |||||||| || | | ||||| |
|
|
| T |
21311739 |
caactacctcatttgcaataagaatgccatccagaatttgtttgcctctcacaaaagcggattgattatcagacaccacataactcaaaatagaacgtag |
21311640 |
T |
|
| Q |
206 |
tcgatttgcaagaacctttgccaacaccttatacatgcaacc |
247 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
21311639 |
tcgatttgcaagaacctttgccaacactttatacatacaacc |
21311598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 20891176 - 20891264
Alignment:
| Q |
96 |
ttagcttcatccactacttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccac |
184 |
Q |
| |
|
||||||||||| || || ||||| || ||||| |||||||| ||||||||||| ||| | ||||| ||||| |||||||| |||||||| |
|
|
| T |
20891176 |
ttagcttcatcgacaacctcatttgctataagtatgccatcaagaatctgtttaccacgcacaaaggctgactgagtatctgacaccac |
20891264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 42451283 - 42451243
Alignment:
| Q |
32 |
atcaatcgaatcatatgctttttcaaaatcaactttgaaca |
72 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
42451283 |
atcaaccgagtcatatgcttttttaaaatcaactttgaaca |
42451243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 4720 - 4665
Alignment:
| Q |
32 |
atcaatcgaatcatatgctttttcaaaatcaactttgaacaataataaatcctttt |
87 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
4720 |
atcaatggaatcatatgctttttcaaaatcaactttgaagagtaataattcctttt |
4665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 251
Target Start/End: Complemental strand, 121004 - 120854
Alignment:
| Q |
101 |
ttcatccactacttcattcgcgataagaatgccatctagaatctgtttgccatgaacaaatgctgattgagtatccgacaccaccagaccaattactaca |
200 |
Q |
| |
|
|||||| || ||||||||||| |||| || ||||||| ||| || || || | |||||| |||||||||| || |||||||| |||||| ||| | |
|
|
| T |
121004 |
ttcatcaaccacttcattcgcattaaggataccatctaaaatttggttccccttaacaaaagctgattgagagtctgacaccacactaccaataacttcc |
120905 |
T |
|
| Q |
201 |
cgtaatcgatttgcaagaacctttgccaacaccttatacatgcaacccact |
251 |
Q |
| |
|
||||||| |||||| |||||||| || |||||||||||||| || |||||| |
|
|
| T |
120904 |
cgtaatctatttgctagaaccttcgctaacaccttatacatacaccccact |
120854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 92200 - 92238
Alignment:
| Q |
32 |
atcaatcgaatcatatgctttttcaaaatcaactttgaa |
70 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
92200 |
atcaaccgaatcataagctttttcaaaatcaactttgaa |
92238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 40060 - 40088
Alignment:
| Q |
219 |
acctttgccaacaccttatacatgcaacc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40060 |
acctttgccaacaccttatacatgcaacc |
40088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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