View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_82 (Length: 251)
Name: NF1129_low_82
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5528117 - 5527881
Alignment:
| Q |
1 |
cttaagaaccacatgcaacccaagtacgacaattaaaatgagacggaagaaatatttgttaaacttttgaaaagtgttaagagtttaagagagatgatta |
100 |
Q |
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| T |
5528117 |
cttaagaaccacatgcaacccaagtacgacaattaaaatgagacggaagaaatatttgttaaacttttgaaaagtgttaagagtttaagagagatgatta |
5528018 |
T |
|
| Q |
101 |
agtttnnnnnnnnnnnnnnnnnnnntgagtaatgtgcatatttaagattataagggatataaacaccctttgtagagtcacttcttgataatagtcaatt |
200 |
Q |
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| T |
5528017 |
agttttaaaaaaaaaaagtaaaaa-tgagtaatgtgcacatttaagattatatgggatataaacaccctttgtagagtcacttcttgataatagtcaatt |
5527919 |
T |
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| Q |
201 |
atgttcaaaatttgatgaaatgtaagactttgaggtct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5527918 |
atgttcaaaatttgatgaaatgtaagactttgaggtct |
5527881 |
T |
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