View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_low_83 (Length: 250)
Name: NF1129_low_83
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_low_83 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 3083137 - 3083289
Alignment:
| Q |
1 |
ctattggagttaacatacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacc |
100 |
Q |
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|||||||||||||||||||||||||||| | |||||||||| | |||||||||||||| |||||||||||| |||||||||| |||||||||| |||||| |
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| T |
3083137 |
ctattggagttaacatacatgtgcacaaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaaggttacttacc |
3083236 |
T |
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| Q |
101 |
tcacgattttaagtagctatttgactgcattttctttgagaaaacaatggctac |
154 |
Q |
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| T |
3083237 |
tca-gatttatagtagctatttaactgcattctctctgagcaaacaatggctac |
3083289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 38403950 - 38404072
Alignment:
| Q |
32 |
ttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaagtagctatttgactgcatt |
131 |
Q |
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| T |
38403950 |
ttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcatt |
38404049 |
T |
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| Q |
132 |
ttctttgagaaaacaatggctac |
154 |
Q |
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| T |
38404050 |
ctctctgagcaaacaatggctac |
38404072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 38404139 - 38404214
Alignment:
| Q |
160 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgat |
235 |
Q |
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| T |
38404139 |
aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattgat |
38404214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 40909886 - 40910038
Alignment:
| Q |
1 |
ctattggagttaacatacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacc |
100 |
Q |
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|||||||||||||||||||||||||||| | |||||||||| | |||||||||||||| |||||||||||| |||||||||| |||||||||| |||||| |
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| T |
40909886 |
ctattggagttaacatacatgtgcacaaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaaggttacttacc |
40909985 |
T |
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| Q |
101 |
tcacgattttaagtagctatttgactgcattttctttgagaaaacaatggctac |
154 |
Q |
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| T |
40909986 |
tca-gatttatagtagctatttaactgcattctctctgagcaaacaatggctac |
40910038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 33814113 - 33814188
Alignment:
| Q |
160 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgat |
235 |
Q |
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| T |
33814113 |
aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattgat |
33814188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 33873583 - 33873658
Alignment:
| Q |
160 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgat |
235 |
Q |
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| T |
33873583 |
aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattgat |
33873658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 99540 - 99662
Alignment:
| Q |
32 |
ttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaagtagctatttgactgcatt |
131 |
Q |
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||||||| ||||||||||||||| | || |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
99540 |
ttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcatt |
99639 |
T |
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| Q |
132 |
ttctttgagaaaacaatggctac |
154 |
Q |
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| T |
99640 |
ctctctgagcaaacaatggctac |
99662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 99729 - 99804
Alignment:
| Q |
160 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgat |
235 |
Q |
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| T |
99729 |
aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattgat |
99804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 24469303 - 24469255
Alignment:
| Q |
106 |
attttaagtagctatttgactgcattttctttgagaaaacaatggctac |
154 |
Q |
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|||||||||||||||||||| |||| ||| |||| ||||||||||||| |
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| T |
24469303 |
attttaagtagctatttgaccacattctctctgagcaaacaatggctac |
24469255 |
T |
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