View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11300_high_10 (Length: 298)
Name: NF11300_high_10
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 51706978 - 51707261
Alignment:
| Q |
5 |
ttttacagcaacccacataattattgaagctctttcttcaattgttttgacgttaggtataaattataggttaccaatttcctttttgtcattcctttca |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51706978 |
ttttacagcaaaccacataattattgaagctctttcttcaattgttttgacgttaggtataaattataggttaccaatttcctttttgtcattcctttca |
51707077 |
T |
|
| Q |
105 |
aaatatcatgatgatattcagcaacgtgcatcatactttaggtgcaatcgttggagtgccaaaaaattcggtacaatagaagctaatcaagttgctcact |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
51707078 |
aaatatcatgatgatattcagcaacgtgcatcatactttaggtgcaatcgttggagtgccaaaaaattcgttacagtagaagctaatcaagttgctcact |
51707177 |
T |
|
| Q |
205 |
atttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacaccttgtattgatgcaactgtggcctttg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51707178 |
atttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacaccttgtattgatgcaactgtggcctttg |
51707261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 662714 - 662796
Alignment:
| Q |
182 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacacctt |
264 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||| |||||||||||||||| ||| | ||||||| ||||||| |||| |
|
|
| T |
662714 |
agaagctaatcaagctccacactatttagcaaaatatgtattttctatttcttctgatgttatttggattaaagaaacgcctt |
662796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 19119741 - 19119648
Alignment:
| Q |
182 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacaccttgtattgatgca |
275 |
Q |
| |
|
|||||||||||||| || |||||||||| |||| || || | ||||||| ||| ||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
19119741 |
agaagctaatcaagctggccactatttagaaaaacatgcaatctctatttattccgatgttgcttggattgaagaaataccttgtatagatgca |
19119648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 4523818 - 4523899
Alignment:
| Q |
182 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacacctt |
264 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| || ||| ||||| || | || || |||||||||| ||||||||| |
|
|
| T |
4523818 |
agaagctaatcaagctgctcactattttgcaaaatatgcaatttttattt-ttttgttgttgtttggattgaataaacacctt |
4523899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 47488913 - 47488806
Alignment:
| Q |
182 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacac---cttgtattgatgcaact |
278 |
Q |
| |
|
||||||||||||| |||| | | |||| |||||| | || ||||||||||||||||||||| |||||||||| ||| || |||||||||||||| | |
|
|
| T |
47488913 |
agaagctaatcaaactgctaaatgtttaacaaaatgtgcaatttctatttcttcttatgatgtttggattgaaaaaataccttcttgtattgatgcagtt |
47488814 |
T |
|
| Q |
279 |
gtggcctt |
286 |
Q |
| |
|
|||||||| |
|
|
| T |
47488813 |
gtggcctt |
47488806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University