View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11300_high_16 (Length: 241)

Name: NF11300_high_16
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11300_high_16
NF11300_high_16
[»] chr1 (8 HSPs)
chr1 (19-240)||(15800434-15800655)
chr1 (27-237)||(15830026-15830236)
chr1 (27-237)||(15831754-15831964)
chr1 (27-237)||(15833481-15833691)
chr1 (19-177)||(15828392-15828550)
chr1 (111-240)||(15820897-15821026)
chr1 (71-112)||(46621543-46621584)
chr1 (71-112)||(46627276-46627317)
[»] scaffold0563 (6 HSPs)
scaffold0563 (27-237)||(10219-10429)
scaffold0563 (27-237)||(537-747)
scaffold0563 (27-199)||(5198-5370)
scaffold0563 (27-199)||(7392-7564)
scaffold0563 (27-237)||(1601-1811)
scaffold0563 (27-237)||(3370-3580)
[»] scaffold0492 (2 HSPs)
scaffold0492 (27-237)||(579-789)
scaffold0492 (22-199)||(1594-1772)
[»] scaffold0754 (1 HSPs)
scaffold0754 (27-237)||(3687-3897)
[»] scaffold0543 (1 HSPs)
scaffold0543 (27-237)||(54-264)
[»] chr5 (7 HSPs)
chr5 (19-235)||(37328180-37328396)
chr5 (26-197)||(22654140-22654311)
chr5 (71-199)||(37224939-37225068)
chr5 (71-199)||(38848947-38849075)
chr5 (71-199)||(38750027-38750155)
chr5 (71-103)||(38865933-38865965)
chr5 (71-103)||(39310679-39310711)
[»] chr7 (1 HSPs)
chr7 (71-112)||(37147554-37147595)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 15800434 - 15800655
Alignment:
Q  19 ccctctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagac 118  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15800434 ccctctcgtctaggaaccaagagacataggccttcgcacaagtcccgtggaccaactctcaacttggagcgggcaggccagcatattgcagccaacagac 15800533  T
Q  119 cagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagact 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||    
T  15800534 cagcccaacaagccgtagccatgttccatcactctaatgctcccactcgggtcacaagttggcgctacccaactcagcaaactgcctagcttctcagact 15800633  T
Q  219 tttatatagagttgattttgtt 240  Q
    |||||||||| |||||||||||    
T  15800634 tttatatagacttgattttgtt 15800655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 15830026 - 15830236
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  15830026 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 15830125  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  15830126 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 15830225  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  15830226 gacttgatttt 15830236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 15831754 - 15831964
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  15831754 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 15831853  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||| ||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  15831854 caagccgtagccacgttccatcactttggtgctcccccttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 15831953  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  15831954 gacttgatttt 15831964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 15833481 - 15833691
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  15833481 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 15833580  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||| ||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  15833581 caagccgtagccacgttccatcactttggtgctcccccttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 15833680  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  15833681 gacttgatttt 15833691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 15828392 - 15828550
Alignment:
Q  19 ccctctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagac 118  Q
    |||||||||||||||||||| ||||||  |||||||| ||||||| ||||  |||||||||||||||||||||||| ||||||||||| ||| ||| |||    
T  15828392 ccctctcatctaggaaccaatagacatcggccttcgcccatgtcccgtggcacaactctcaacttggagcgggcagaccagcatattgaagctaactgac 15828491  T
Q  119 cagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagt 177  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||||  ||||||||||    
T  15828492 cagcccaacaagctgtagccatgttccatcacattaatgctcccacttgggtcacaagt 15828550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 15820897 - 15821026
Alignment:
Q  111 caacagaccagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagctt 210  Q
    |||||||||| ||||||||| | ||||||||||| |||| || |||||| |||||  ||| ||||||||||||||||||||||| |||| |  ||||| |    
T  15820897 caacagaccaacccaacaagccatagccatgttcaatcattcaaatgcttccacttgggttacaagttggcgctacccaactcaacaaacttccaagcct 15820996  T
Q  211 ctcagacttttatatagagttgattttgtt 240  Q
     ||||| | || |||||| |||||| ||||    
T  15820997 gtcagattattgtatagacttgattgtgtt 15821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 46621543 - 46621584
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagcca 112  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  46621543 caactctcaacttggagtgggcaggccagcatggtgcagcca 46621584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 46627276 - 46627317
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagcca 112  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  46627276 caactctcaacttggagcgggcaggccggcatggtgcagcca 46627317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 10429 - 10219
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  10429 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 10330  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  10329 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 10230  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  10229 gacttgatttt 10219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 747 - 537
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  747 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 648  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||| ||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  647 caagccgtagccacgttccatcactttggtgctcccccttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 548  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  547 gacttgatttt 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 5198 - 5370
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||  |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  5198 tctagggaccaagagacatagaccttcacccatgtcccgaggcacaactctcaacttggagcgggcaggccaacatattgcagctaacagaccagccaaa 5297  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaa 199  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||    
T  5298 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaa 5370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 7564 - 7392
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||  |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  7564 tctagggaccaagagacatagaccttcacccatgtcccgaggcacaactctcaacttggagcgggcaggccaacatattgcagctaacagaccagccaaa 7465  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaa 199  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||    
T  7464 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaa 7392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 1601 - 1811
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||   ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  1601 tctagggaccaagagacatagaccttcacccatgtcccgaggcaaaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 1700  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    ||||  ||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  1701 caagcggtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 1800  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  1801 gacttgatttt 1811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 3370 - 3580
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||   ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  3370 tctagggaccaagagacatagaccttcacccatgtcccgaggcaaaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 3469  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    ||||  ||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  3470 caagcggtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 3569  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  3570 gacttgatttt 3580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 789 - 579
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  789 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 690  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  689 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 590  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  589 gacttgatttt 579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 1594 - 1772
Alignment:
Q  22 tctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttgg-agcgggcaggccagcatattgcagccaacagacca 120  Q
    |||| |||||| |||||||||||||  ||||| | ||||||| | ||  ||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  1594 tctcttctagggaccaagagacatagaccttcacccatgtcccgaggcacaactctcaacttgggagcgggcaggccaacatattgcagctaacagacca 1693  T
Q  121 gcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaa 199  Q
    ||| |||||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||    
T  1694 gccaaacaagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaa 1772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 3897 - 3687
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| ||||||||||| |  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  3897 tctagggaccaagagacagagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 3798  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  |||||||||||||||||| |||||||||||||   |||||| | | ||| | |||||||    
T  3797 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctatccaactcagcaaacaatcaagcatgttagattgttatata 3698  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  3697 gacttgatttt 3687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 54 - 264
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| ||||||||||| |  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  54 tctagggaccaagagacagagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 153  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  |||||||||||||||||| |||||||||||||   |||||| | | ||| | |||||||    
T  154 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctatccaactcagcaaacaatcaagcatgttagattgttatata 253  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  254 gacttgatttt 264  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 37328180 - 37328396
Alignment:
Q  19 ccctctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagac 118  Q
    ||||||| |||||||||||||||||  | |||||||| ||  ||| ||||  ||||||||||||||||| ||||| |||| ||||||||||  | ||| |    
T  37328180 ccctctcgtctaggaaccaagagaccaaggccttcgcccaaatcccgtggcccaactctcaacttggagagggcaagccaacatattgcagaaaccagcc 37328279  T
Q  119 cagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagact 218  Q
    |||||||||||| | ||||||||| |||  ||| || |||||||||   ||| |||||||| ||||||||||||||||||| |  || |||| ||||||     
T  37328280 cagcccaacaagccatagccatgtcccaatactttagtgctcccacatgggtgacaagttgacgctacccaactcagcaaactcacaggcttgtcagaca 37328379  T
Q  219 tttatatagagttgatt 235  Q
     ||||||||| ||||||    
T  37328380 gttatatagacttgatt 37328396  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 22654311 - 22654140
Alignment:
Q  26 atctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagccca 125  Q
    ||||||||||||||||||  | |||||||| ||  ||| ||||  |||||||||||||||||||||||  ||| ||||||||||  | ||  | ||| ||    
T  22654311 atctaggaaccaagagaccaaggccttcgcccaaatcccgtggcccaactctcaacttggagcgggcaaaccaacatattgcagaaaccaacctagctca 22654212  T
Q  126 acaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagca 197  Q
    ||||| | ||| ||||| | || ||  || ||||||||||  ||| |||||||| |||||||||||||||||    
T  22654211 acaagccatagtcatgtcctataaccttagtgctcccacttgggtgacaagttgacgctacccaactcagca 22654140  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 37225068 - 37224939
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagccaacagaccagccca-acaagacgtagccatgttccatcactctaatgctcccactcagg 169  Q
    |||||||||||||||||||| || |||||||||||||||  | |||  ||||| | ||||| | ||||||||| |||| | | || ||||| ||||  ||    
T  37225068 caactctcaacttggagcggacaagccagcatattgcagaaaccagctcagccaagacaagccatagccatgtcccattattttagtgctctcacttggg 37224969  T
Q  170 tcacaagttggcgctacccaactcagcaaa 199  Q
    || ||||||||| |||||||||||||||||    
T  37224968 tcccaagttggcactacccaactcagcaaa 37224939  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 38848947 - 38849075
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggt 170  Q
    ||||||||||||||||||||||||||||||||| || | || |||| ||| ||    |||||  ||||||||||||||||  | ||||||||||   |||    
T  38848947 caactctcaacttggagcgggcaggccagcatagtgtatcctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggt 38849046  T
Q  171 cacaagttggcgctacccaactcagcaaa 199  Q
     ||||||||| | ||  ||||||||||||    
T  38849047 tacaagttggtgttaatcaactcagcaaa 38849075  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 38750155 - 38750027
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggt 170  Q
    ||||||||||||||||| ||||||||||||||| || | || |||| ||| ||    |||||  ||||||||||||||||  | ||||||||||   |||    
T  38750155 caactctcaacttggagtgggcaggccagcataatgtaccctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggt 38750056  T
Q  171 cacaagttggcgctacccaactcagcaaa 199  Q
     ||||||||| | ||  ||||||||||||    
T  38750055 tacaagttggtgttattcaactcagcaaa 38750027  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 38865933 - 38865965
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcata 103  Q
    ||||||||||||||||| |||||||||||||||    
T  38865933 caactctcaacttggagtgggcaggccagcata 38865965  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 39310679 - 39310711
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcata 103  Q
    ||||||||||||||||| |||||||||||||||    
T  39310679 caactctcaacttggagtgggcaggccagcata 39310711  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 37147595 - 37147554
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagcca 112  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  37147595 caactctcaacttggagtgggcaggccagcatggtgcagcca 37147554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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