View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11300_high_19 (Length: 235)
Name: NF11300_high_19
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 31247241 - 31247447
Alignment:
| Q |
3 |
gaaaaacattttttggtagatatgtagctggattatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggat |
102 |
Q |
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| T |
31247241 |
gaaaaacattttttggtagatatgtagctggattatatatttttgactgccccggtttaattgagatggaatgctgttatagaatggctttttcttggat |
31247340 |
T |
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| Q |
103 |
gatacaactccttgaggtgcctactccatcctttttctttttgtctatatctctttgtatgtgattgaactaatacattaccaatttgtctggtataagg |
202 |
Q |
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| T |
31247341 |
gatacaactcctgaaggtgcctactccatcctttttc---ttgtctatatttatttgtatgtgattgaactaaaacataactaatttatctggtaccagg |
31247437 |
T |
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| Q |
203 |
tgcacatgca |
212 |
Q |
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|||||||||| |
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| T |
31247438 |
tgcacatgca |
31247447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 31212839 - 31212982
Alignment:
| Q |
31 |
tggattatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggatgatacaactccttgaggtgcctactcca |
130 |
Q |
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| T |
31212839 |
tggattatatatttttgactgccccagtttaattgacatggaatgctgttataaaatggctttttcttggatgatacaactccttaaggtgcctacacca |
31212938 |
T |
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| Q |
131 |
tcctttttctttttgtctatatctctttgtatgtgattgaactaa |
175 |
Q |
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| T |
31212939 |
tcc-ttttcctcttgtctatatttatttttatgtgattaaactaa |
31212982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 31304367 - 31304511
Alignment:
| Q |
33 |
gattatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggatgatacaactccttgaggtgcctactccatc |
132 |
Q |
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| T |
31304367 |
gattatatatttttgactgccccagtttaattgacacaaaatgctgttatagaatggctttttcttggatggtacaactcctgcaggtgcctcctccctc |
31304466 |
T |
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| Q |
133 |
ctttttctttttgtctatatctctttgtatgtgattgaactaata |
177 |
Q |
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| T |
31304467 |
ttttttccttttgtctatatctctgtttatgtgattcaactaata |
31304511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 13615032 - 13615176
Alignment:
| Q |
30 |
ctggattatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggatgatacaactccttgaggtgcctactcc |
129 |
Q |
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| T |
13615032 |
ctggattatatatttttgattgccccagtttaattgacacaaaatgctgttatagaatggctttttcttggatggtaaaactccttcaggtgcctcctcc |
13615131 |
T |
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| Q |
130 |
atcctttttctttttgtctatatctctttgtatgtgattgaacta |
174 |
Q |
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|||||||||| |||||||||||||||||| ||| ||||| ||||| |
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| T |
13615132 |
atcctttttccttttgtctatatctctttttatctgattcaacta |
13615176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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