View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11300_high_2 (Length: 652)
Name: NF11300_high_2
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_high_2 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 338
Target Start/End: Complemental strand, 5174893 - 5174554
Alignment:
| Q |
2 |
gttcctttaaagatatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctacctt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
5174893 |
gttcctttaaagatatcagatagaagttgttgttgtaaatccacttgtccagcaggttgcccccaaacttccctaatattgggaatgaagctcctacctt |
5174794 |
T |
|
| Q |
102 |
caaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttga--- |
198 |
Q |
| |
|
||||| | ||||| |||| |||| ||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| || |
|
|
| T |
5174793 |
caaaattacgaccgattttgttgaaaatatctttggctaaggtagttttaccaatacctcccataccccacatccctatcagtagaacatcattagattg |
5174694 |
T |
|
| Q |
199 |
ttggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaact |
298 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
5174693 |
ttggatgtctagcaattgaatcatatcttgcactcgagattcgagtcccaccggattatcagcaacaaacaagtctgtcttgtcaataaaacgtgaaact |
5174594 |
T |
|
| Q |
299 |
tttttgacaatatcctcaattgcctcactttcattcctac |
338 |
Q |
| |
|
|| | ||||||| || ||| || |||||||||||||||| |
|
|
| T |
5174593 |
ttgtcaacaatattcttaatcgcttcactttcattcctac |
5174554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 2 - 343
Target Start/End: Complemental strand, 5276720 - 5276388
Alignment:
| Q |
2 |
gttcctttaaagatatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctacctt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
5276720 |
gttcctttaaagatatcagatagaagttgttgttgtaaatccacttgcc------------cccaaacttccctaatattgggaatgaagctcctacctt |
5276633 |
T |
|
| Q |
102 |
caaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgattg |
201 |
Q |
| |
|
||||| | ||||| |||| |||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| ||||| |
|
|
| T |
5276632 |
caaaattacgaccgattttgttgaaaatatctttggctaaggtagttttaccaatacgtcccataccccacatccctaccagtagaacatcattagattg |
5276533 |
T |
|
| Q |
202 |
---gctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaact |
298 |
Q |
| |
|
| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| || |||| |
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|
| T |
5276532 |
ttggatgtctagcaatggaatcatatcttgcactcgagatttgagtcccactggattatcagcaacaaacaagcatgtcttgtcaataaaacatgaaact |
5276433 |
T |
|
| Q |
299 |
tttttgacaatatcctcaattgcctcactttcattcctacaaaaa |
343 |
Q |
| |
|
|| | ||||||| || ||| || ||||||||||||||||||||| |
|
|
| T |
5276432 |
ttgtcaacaatattcttaatcgcttcactttcattcctacaaaaa |
5276388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 58 - 371
Target Start/End: Original strand, 5183983 - 5184296
Alignment:
| Q |
58 |
ttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaata |
157 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||| |||||||| | ||||||||| || |||||||||||| |
|
|
| T |
5183983 |
ttgctcccaaacttccctaatatttgcaaggaagctcctaccctcaaaattgcgaccaatttcattgtaaatggatttggctaacgttgttttaccaata |
5184082 |
T |
|
| Q |
158 |
ccccccataccagacatccctagtagtaaaacatcatttga---ttggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggat |
254 |
Q |
| |
|
|| |||||||| | ||||||||||||| |||| ||||||| |||| ||| |||||||||||||| |||| | |||||||||| || ||| || |||| |
|
|
| T |
5184083 |
cctcccataccccagatccctagtagtataacaccatttgatcgttggatgtctagcaattgaatcacatctcgtactcgagattcgactcccaccggat |
5184182 |
T |
|
| Q |
255 |
tatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattcctacaaaaaatggaccgtaa |
354 |
Q |
| |
|
|||| |||| ||||| ||||||||| | || ||| ||||||| |||| ||||| || | ||||||||||||||||||||| |||||||||||| || |
|
|
| T |
5184183 |
tatccgcaatgaacaaatctgtcttgcctagcaaatgtgtaacattttcaacaatgtctttgattgcctcactttcattccta-aaaaaatggacc--aa |
5184279 |
T |
|
| Q |
355 |
agaaaagttgaatatac |
371 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
5184280 |
agaaaagttgaacatac |
5184296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 5423768 - 5423428
Alignment:
| Q |
14 |
atatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgac |
113 |
Q |
| |
|
|||||| | |||||||||| |||||||| |||| || |||| || ||||||||||||||| |||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
5423768 |
atatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcgac |
5423669 |
T |
|
| Q |
114 |
caatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgattggct--------- |
204 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| |||||||||| ||||||||||| ||||||||||||| | ||||| || |||||| | |
|
|
| T |
5423668 |
caattttattgtaaatagctttggcaatggttgttttaccaactccccccataccccacatccctagtagaagaacattatctgattgttttatatcttg |
5423569 |
T |
|
| Q |
205 |
gtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttg |
304 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| | ||| || ||||||| ||||| |||||| |||||||||||||| ||| ||||| |||| |
|
|
| T |
5423568 |
gtccagcagttgaatcatatcttgcactcgagattcaactcccacaggattattagcaataaacaaatctgtcttgtcaagcttacgcgtaacattttca |
5423469 |
T |
|
| Q |
305 |
acaatatcctcaattgcctcactttcattcctacaaaaaat |
345 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
5423468 |
acaatatccttaatagcctcactttcattcctacaaaaaat |
5423428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 5368477 - 5368135
Alignment:
| Q |
12 |
agatatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcg |
111 |
Q |
| |
|
|||||||| | |||||||||| |||||||| |||| || |||| || ||||||||||||||| |||||||||| |||||| |||||||||||| |||| |
|
|
| T |
5368477 |
agatatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcg |
5368378 |
T |
|
| Q |
112 |
accaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttga---ttggctgtgt |
208 |
Q |
| |
|
||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||| ||||||| ||||| | |||||||||||| |||| | | | |
|
|
| T |
5368377 |
gccaattttattgtaaatagctttggcaatggttgttttaccaactccccccataccccacatccccagtagaagaacatcatttgattgttggatatct |
5368278 |
T |
|
| Q |
209 |
agc------aattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttt |
302 |
Q |
| |
|
|| | |||||||||| ||||||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||| ||| ||||| |||| |
|
|
| T |
5368277 |
tgctccattagttgaatcataccttgcactcgagattcaactcccactggattatcagcaataaacaattctgtcttgtcaagcttacgcgtaacatttt |
5368178 |
T |
|
| Q |
303 |
tgacaatatcctcaattgcctcactttcattcctacaaaaaat |
345 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||||| |
|
|
| T |
5368177 |
caacaatatcctggatagccttactttcattcctacaaaaaat |
5368135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 5395058 - 5394725
Alignment:
| Q |
14 |
atatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgac |
113 |
Q |
| |
|
|||||| | |||||||||| |||||| ||||| ||| | || ||||||||| |||||||| |||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
5395058 |
atatcaaagagaagttgtttttgtaagtcaaccggtccaacattttgctcccacacttccctaatatttgcaaggaagctcctaccctcaaaattgcgac |
5394959 |
T |
|
| Q |
114 |
caatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgat---tggctgtgtag |
210 |
Q |
| |
|
||||| |||||| || |||||||||||||| |||||||||||||| |||||||| | ||||||||||||| ||||||||| | | || ||| ||| |
|
|
| T |
5394958 |
caattctgttgtatatggctttggctaaggtggttttaccaatacctcccataccccatatccctagtagtacaacatcattgggtcgctgtatgtctag |
5394859 |
T |
|
| Q |
211 |
caattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaata |
310 |
Q |
| |
|
||| ||||||| |||| | || ||||||| | || ||||||| || ||||| |||||||||||| |||||||| ||||||| || |||| ||||| |
|
|
| T |
5394858 |
caactgaatcacatctcgtacccgagattccacgcccactggataattagcaataaacaagtctgttttgtcaagcaaacgtgaaatattttcaacaatg |
5394759 |
T |
|
| Q |
311 |
tcctcaattgcctcactttcattcctacaaaaaa |
344 |
Q |
| |
|
|| | ||||| |||||||||||||||||||||| |
|
|
| T |
5394758 |
tcattgattgcgtcactttcattcctacaaaaaa |
5394725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 62 - 345
Target Start/End: Original strand, 5069106 - 5069398
Alignment:
| Q |
62 |
tcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaatacccc |
161 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||||||||||| |||| ||||||| ||||||||||||||||| | ||| |||||||||| || | |
|
|
| T |
5069106 |
tcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttaccaactcctc |
5069205 |
T |
|
| Q |
162 |
ccataccagacatccctagtagtaaaacatcatttga---ttggct------gtgtagcaattgaatcatatcttgcactcgagatttgagtccgactgg |
252 |
Q |
| |
|
||||||| |||||||||| || | |||||||||||| |||| | || |||| |||||||||||| ||||||||||||| | ||| ||||| |
|
|
| T |
5069206 |
ccataccccacatccctagaaggagaacatcatttgatagttggatatcttggtccagcagttgaatcatatcctgcactcgagattcaactcccactgg |
5069305 |
T |
|
| Q |
253 |
attatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattcctacaaaaaat |
345 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||| ||| ||||| |||| ||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
5069306 |
attattagcaataaacaagtctgccttgtcaagcttacgcgtaacattttcaacaatatcctctataacatcactttcattcctacaaaaaat |
5069398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 12 - 345
Target Start/End: Original strand, 5356601 - 5356943
Alignment:
| Q |
12 |
agatatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcg |
111 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| | ||| || ||||||||||||||| |||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
5356601 |
agatatcagagagaagttgttcttgtaaattcacttggccagctttttcctcccaaacttccctaatatttgcaaggaagcttctaccatcaaaatcgcg |
5356700 |
T |
|
| Q |
112 |
accaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgattggctg------ |
205 |
Q |
| |
|
||||||| |||||||||||||| | | ||| ||||| |||| || |||||||| |||||||||| || ||||||||||||||||| | |
|
|
| T |
5356701 |
gccaattttattgtaaatagcttttccgatggttgttttgccaactcctcccataccccacatccctagaaggaaaacatcatttgattgttggatatct |
5356800 |
T |
|
| Q |
206 |
---tgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttt |
302 |
Q |
| |
|
| ||||| | ||||||||||||||| ||||||| | ||| || ||||||| ||||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
5356801 |
tgttctagcagcttaatcatatcttgcacacgagattcaactcccaccggattattagcaacaaataagtctgtcttgtcaagcaaacgtgtaatatttt |
5356900 |
T |
|
| Q |
303 |
tgacaatatcctcaattgcctcactttcattcctacaaaaaat |
345 |
Q |
| |
|
| |||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
5356901 |
taacaatatccttgatagcttcactttcattcctacaaaaaat |
5356943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 58 - 344
Target Start/End: Original strand, 5075762 - 5076051
Alignment:
| Q |
58 |
ttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaata |
157 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||| |||||||| ||||| || | ||| ||||||||||| |
|
|
| T |
5075762 |
ttgctcccaaacttccctgatatttgcaaggaagctcctacctgcaaatttacgaccaattttattgtaaatggcttttgcaatggtggttttaccaatc |
5075861 |
T |
|
| Q |
158 |
ccccccataccagacatccctagtagtaaaacatcat---ttgattggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggat |
254 |
Q |
| |
|
|| |||||||| | ||||||||||||| | |||| || |||| ||| || | |||||||||||||| |||||||||| || ||| ||||||| |
|
|
| T |
5075862 |
ccacccataccccaaatccctagtagtacattttcattggtttgttggatgtttaaccgttgaatcatatcttctactcgagattcgactcccactggat |
5075961 |
T |
|
| Q |
255 |
tatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattcctacaaaaaa |
344 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||| || |||| || ||||| || ||||| |||||||||||||||| ||||| |
|
|
| T |
5075962 |
tatcagcaatgaacaaatctgtcttgtcaagcaaacgtgaaatattttccactatatcgtcgattgcttcactttcattcctacgaaaaa |
5076051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 56 - 371
Target Start/End: Complemental strand, 5341667 - 5341351
Alignment:
| Q |
56 |
ggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaa |
155 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||||| || | |||| || || ||||| ||||| | | |||||| ||||||| |
|
|
| T |
5341667 |
ggttgctcccaaacttccctaatatttgcaaggaaactcctaccttcaaagttgtggccaagtttattataaatggctttcacaatggtagtcttaccaa |
5341568 |
T |
|
| Q |
156 |
taccccccataccagacatccctagtagtaaaacatcatttgattg---gctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactgg |
252 |
Q |
| |
|
| || |||||||| ||||||||| ||||| || |||||||||||| | | | |||| ||||||||||||||||| ||| |||| | || |||| |
|
|
| T |
5341567 |
ttcctcccataccccacatccctaatagtagaatatcatttgattgttggatatcaagcagttgaatcatatcttgcaatcgggattcaacccccgctgg |
5341468 |
T |
|
| Q |
253 |
attatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattcctacaaaaaatggaccgt |
352 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| || || |||||||||| ||| ||||||| || ||||| |||||||||||| |||||||| | | |
|
|
| T |
5341467 |
attatcaacaacaaacaagtctgtcttgttaagcaagcgcgtaactttttcgacgatatccttgatagcctcgctttcattcctataaaaaatgaatc-- |
5341370 |
T |
|
| Q |
353 |
aaagaaaagttgaatatac |
371 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
5341369 |
aaagaaaagttgagtatac |
5341351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 58 - 344
Target Start/End: Original strand, 5104903 - 5105198
Alignment:
| Q |
58 |
ttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaata |
157 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| ||||| |||||| | | ||||||| ||||||||||||||||| | ||| |||||||||| |
|
|
| T |
5104903 |
ttgctcccaaacttccctaatatttgcaaggaagcttctaccatcaaaattatggccaattttattgtaaatagctttggcaatggttgttttaccaact |
5105002 |
T |
|
| Q |
158 |
ccccccataccagacatccctagtagtaaaacatcatttga---ttggct------gtgtagcaattgaatcatatcttgcactcgagatttgagtccga |
248 |
Q |
| |
|
|| |||||||| ||||||||||||| | |||||||||||| |||| | || ||||| ||||||||||||||| |||||||||| | ||| | |
|
|
| T |
5105003 |
cctcccataccccacatccctagtaggagaacatcatttgattgttggatatcttggtctagcagttgaatcatatcttgaactcgagattcaactccca |
5105102 |
T |
|
| Q |
249 |
ctggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattcctacaaaaaa |
344 |
Q |
| |
|
| ||||||| ||||| |||||| |||||||||||||| ||| | || || || || |||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
5105103 |
ccggattattagcaataaacaaatctgtcttgtcaagcaaatgcgttacattgttaacaatatccttgataacctcactttcattcctacataaaa |
5105198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 5431434 - 5431131
Alignment:
| Q |
2 |
gttcctttaaagatatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctacctt |
101 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||||||| |||||| | | ||||||||||||||||||||| | |||||||| ||| ||||| |||| |
|
|
| T |
5431434 |
gttcctctgaagatatcagatagaagttgttcttgtaaatctacttgtttggtaggttgctcccaaacttccctaacatttgcaaggaaactcctccctt |
5431335 |
T |
|
| Q |
102 |
caaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttga--- |
198 |
Q |
| |
|
|||| |||| || ||||| || ||||| ||||| || | || ||||| || || ||||||||||| ||||||| ||||||| ||| ||||||| |
|
|
| T |
5431334 |
caaacttgcggccgatttcattataaattgcttttgcaatagttgtttttccgattccccccataccccacatcccaagtagtattacaccatttgattg |
5431235 |
T |
|
| Q |
199 |
ttggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaact |
298 |
Q |
| |
|
|||| ||| |||| |||||| | |||||||| |||||| | | ||| ||||| |||||||||| |||| |||| |||||||||| ||| | |||| | |
|
|
| T |
5431234 |
ttggatgtctagccgttgaataacatcttgcattcgagaatcaattcccactggcttatcagcaatgaacatgtctttcttgtcaagcaaatgagtaatt |
5431135 |
T |
|
| Q |
299 |
tttt |
302 |
Q |
| |
|
|||| |
|
|
| T |
5431134 |
tttt |
5431131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 60 - 302
Target Start/End: Original strand, 5133938 - 5134189
Alignment:
| Q |
60 |
gctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaatacc |
159 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||| |||||||| ||||| || | ||| |||||||||| || |
|
|
| T |
5133938 |
gctcccaaacttccctaatatttgcaaggaagctcctaccttcaaaatcgcggccaattttattgtaaatggctttcgcaatggttgttttaccaacgcc |
5134037 |
T |
|
| Q |
160 |
ccccataccagacatccctagtagtaaaacatcatttgattg---------gctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgact |
250 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||| ||| ||||||| | ||| ||| |
|
|
| T |
5134038 |
tcccataccccacatccctagaagtataacatcatttgattgttcaatatctttgtctagcaattgaatcatatctagcatacgagattcaactcccact |
5134137 |
T |
|
| Q |
251 |
ggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttt |
302 |
Q |
| |
|
||||||| ||||| |||||| ||| | |||||||| ||||| ||||| |||| |
|
|
| T |
5134138 |
ggattattagcaataaacaaatctattttgtcaagcaaacgcgtaacatttt |
5134189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 5348378 - 5348239
Alignment:
| Q |
62 |
tcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaatacccc |
161 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||||||||||| |||| ||||||| ||||||||||||||||| | ||| |||||||||| || | |
|
|
| T |
5348378 |
tcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttaccaactcctc |
5348279 |
T |
|
| Q |
162 |
ccataccagacatccctagtagtaaaacatcatttgattg |
201 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
5348278 |
ccataccccacatccctagtaggagaacatcatttgattg |
5348239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 62 - 337
Target Start/End: Complemental strand, 5094008 - 5093730
Alignment:
| Q |
62 |
tcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaatacccc |
161 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||||| | || |||||||| || || |||||||| || | ||| ||||||||||| |||| |
|
|
| T |
5094008 |
tcccaaacttccctaacatttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgttttaccaatccccc |
5093909 |
T |
|
| Q |
162 |
ccataccagacatccctagtagtaaaacatcatttga---ttggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatc |
258 |
Q |
| |
|
||||||| ||||||| ||||| | ||||||||||| |||| ||| || || || ||| | ||||||||||||||| | ||| || || ||||| |
|
|
| T |
5093908 |
ccataccccacatcccaagtagcagtacatcatttgattgttggatgtctaacagttcaataacatcttgcactcgagaaccaactcccacaggtttatc |
5093809 |
T |
|
| Q |
259 |
agcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattccta |
337 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||| | |||| ||||| |||||||||| || |||| | ||||||||||| |
|
|
| T |
5093808 |
agcaatgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatatccttgatggccttattttcattccta |
5093730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 62 - 314
Target Start/End: Original strand, 5159536 - 5159791
Alignment:
| Q |
62 |
tcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaatacccc |
161 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||||| | || |||||||| || || |||||||| || | ||| ||||| ||||| |||| |
|
|
| T |
5159536 |
tcccaaacttccctaacatttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgttttgccaatccccc |
5159635 |
T |
|
| Q |
162 |
ccataccagacatccctagtagtaaaacatcatttga---ttggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatc |
258 |
Q |
| |
|
||||||| ||||||| ||||| | |||||||| || |||| ||| ||||| || ||| | ||||||||||||||| | ||| || |||||||| |
|
|
| T |
5159636 |
ccataccccacatcccaagtagcagtacatcattggagtgttggatgtctagcagttcaataacatcttgcactcgagaaccaactcccacaggattatc |
5159735 |
T |
|
| Q |
259 |
agcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcct |
314 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||| | |||| ||||| |||||||||| |
|
|
| T |
5159736 |
agcaatgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatatcct |
5159791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 5148949 - 5149249
Alignment:
| Q |
14 |
atatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgac |
113 |
Q |
| |
|
|||||| | |||||||||||||||||| || |||| | || || | ||||||| ||||| |||||| | | || ||||||||||| ||| |||| | |
|
|
| T |
5148949 |
atatcaaagagaagttgttgttgtaaagacacatgtccatcatttttcgcccaaacctccctaatatttcctagaaaactcctaccttcgaaattgcggc |
5149048 |
T |
|
| Q |
114 |
caatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgatt---ggctgtgtag |
210 |
Q |
| |
|
|||||| ||||| || ||||| || | ||| | ||| ||||| ||||||||||| |||| ||||||| || ||||||||||||| || ||| ||| |
|
|
| T |
5149049 |
caattttattgtagatggcttttgcaatggtggatttgccaattccccccataccccacattcctagtaatagtacatcatttgatttttggatgtctag |
5149148 |
T |
|
| Q |
211 |
caattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaata |
310 |
Q |
| |
|
|| ||||||||||||||| ||||||| || | |||||||||||||| |||||| |||||||| |||||||| || || | |||||||||| |||||| |
|
|
| T |
5149149 |
cagttgaatcatatcttgtactcgagtttcaactccgactggattatgagcaacgaacaagtcggtcttgtctagcaagtgagtaactttttcaacaata |
5149248 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
|
| |
|
|
| T |
5149249 |
t |
5149249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 5692098 - 5692285
Alignment:
| Q |
14 |
atatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgac |
113 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||||| | || |||| |||||||||||| |||||||||| ||||||||| ||||||||| |||| | |
|
|
| T |
5692098 |
atatcggagagaagttgttgctgtaaagatacttgtccaacattttgcatccaaacttcccttatatttgcaaggaagctccttccttcaaaattgcggc |
5692197 |
T |
|
| Q |
114 |
caatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgattg |
201 |
Q |
| |
|
|||||| |||||||| ||||| || | ||| ||||| ||||| || ||||| || ||||||||| |||| ||||| ||| ||||| |
|
|
| T |
5692198 |
caattttattgtaaatggcttttgcaatggtggttttgccaattcctcccatgccccacatccctattagtcgaacattattagattg |
5692285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 5692412 - 5692538
Alignment:
| Q |
211 |
caattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaata |
310 |
Q |
| |
|
|||||| ||||||||||||||||||| || | ||| |||| || || |||||||||||||||| ||||||| || ||||| |||||||||||||||| |
|
|
| T |
5692412 |
caattgcatcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaata |
5692511 |
T |
|
| Q |
311 |
tcctcaattgcctcactttcattccta |
337 |
Q |
| |
|
|| | || ||||||||||| |||||| |
|
|
| T |
5692512 |
tcttttatagcctcactttcgttccta |
5692538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 5286165 - 5286298
Alignment:
| Q |
69 |
cttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccatacc |
168 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||| |||| ||||| | |||||||| ||||| | | ||| ||||| ||||| ||||||||||| |
|
|
| T |
5286165 |
cttcccttatatttgcaaggaagctcctaccatcaaaattgcggccaatcttattgtaaatggcttttgtaatggttgtttttccaattccccccatacc |
5286264 |
T |
|
| Q |
169 |
agacatccctagtagtaaaacatcatttgattgg |
202 |
Q |
| |
|
|||||||||||||| |||| | ||||||||| |
|
|
| T |
5286265 |
ccacatccctagtagttgaacaccctttgattgg |
5286298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 281
Target Start/End: Complemental strand, 5445042 - 5444831
Alignment:
| Q |
70 |
ttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccatacca |
169 |
Q |
| |
|
|||||| |||||||| | ||||||||| ||||||||| |||| ||| | | |||||||| ||||| || | || ||||| || || |||||||| || |
|
|
| T |
5445042 |
ttccctaatatttgcgaggaagctcctgccttcaaaattgcggccagtcttattgtaaatggcttttgcaattgttgtttttccgatcccccccatgccc |
5444943 |
T |
|
| Q |
170 |
gacatccctagtagtaaaacatcatttgattggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaaca |
269 |
Q |
| |
|
||||||||| ||| | ||| | |||| |||| |||||||| |||||||| ||||| ||||||||||| | ||| |||||||||| |||| ||||| |
|
|
| T |
5444942 |
cacatccctattagcagaaccccctttggttggatgtgtagctgttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaaca |
5444843 |
T |
|
| Q |
270 |
agtctgtcttgt |
281 |
Q |
| |
|
||||||| |||| |
|
|
| T |
5444842 |
agtctgttttgt |
5444831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 5262185 - 5262318
Alignment:
| Q |
69 |
cttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccatacc |
168 |
Q |
| |
|
||||||| |||||||||| ||||||||| || |||||| |||| ||||| | |||||||| ||||| | | ||| ||||| ||||| ||||||||||| |
|
|
| T |
5262185 |
cttcccttatatttgcaaggaagctccttccatcaaaattgcggccaatcttattgtaaatggctttcgtaatggttgttttgccaattccccccatacc |
5262284 |
T |
|
| Q |
169 |
agacatccctagtagtaaaacatcatttgattgg |
202 |
Q |
| |
|
||||||||| |||| |||| | ||||||||| |
|
|
| T |
5262285 |
ccacatccctaatagttgaacaccctttgattgg |
5262318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 618 - 652
Target Start/End: Complemental strand, 5276264 - 5276230
Alignment:
| Q |
618 |
gttgaattaaattacctgaaatttggaactacaaa |
652 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276264 |
gttgaattaaattacctgaaatttggaactacaaa |
5276230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 652
Target Start/End: Original strand, 5692717 - 5692755
Alignment:
| Q |
614 |
aatagttgaattaaattacctgaaatttggaactacaaa |
652 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
5692717 |
aatagttgaatgaaactacctgaaatttggaactacaaa |
5692755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 63 - 344
Target Start/End: Original strand, 4323138 - 4323422
Alignment:
| Q |
63 |
cccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccc |
162 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||| || || || | ||| ||||| ||||| || || |
|
|
| T |
4323138 |
cccaaacctccctaatatttgcaataaagctcctaccttcaaaattgcgaccaattttattgtaaatggcctttgcaacggtggtttttccaattccacc |
4323237 |
T |
|
| Q |
163 |
cataccagacatccctagtagtaaaacatcatttgattggc---tgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattatca |
259 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||| ||| ||| ||| | |||||||||||||||||||||||| | || || || ||||||||| |
|
|
| T |
4323238 |
catcccccacatccctagtagtagaacatcatttgtttgttgagtgtctagaagttgaatcatatcttgcactcgagaatcgatacccacaggattatca |
4323337 |
T |
|
| Q |
260 |
gcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattcctacaaaaaa |
344 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||| |||| |||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
4323338 |
gcaacgaacaagtctgtcttgtccagtaaacgtgtaacattttcaacaatatccttgataacctcactttcgttcctacaaaaaa |
4323422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 4126435 - 4126727
Alignment:
| Q |
25 |
aagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttg |
124 |
Q |
| |
|
|||||||| |||||||| ||||||| || | |||||||||||| ||||| |||||||||| |||||||||||||||||| | || ||||||| ||| |
|
|
| T |
4126435 |
aagttgttcttgtaaatacacttgtccagaaacttgctcccaaacctcccttatatttgcaagaaagctcctaccttcaaaattccggccaattttattg |
4126534 |
T |
|
| Q |
125 |
taaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttga---ttggctgtgtagcaattgaatca |
221 |
Q |
| |
|
||||| ||||| || | ||| ||||||||||| || ||||| || ||||||| || |||| |||||||||||| ||| ||| ||| | |||||||| |
|
|
| T |
4126535 |
taaatggcttttgcaatggtggttttaccaattccacccatcccccacatccccagcagtagaacatcatttgactgttgagtgtctagaagttgaatca |
4126634 |
T |
|
| Q |
222 |
tatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcct |
314 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||| ||| |||||| |||| |||||||||| |
|
|
| T |
4126635 |
tatcttgcactcgagattcgactccgacaggattatcagcaatgaacaagtctgtcttgtcaagcaaatttgtaacattttcaacaatatcct |
4126727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 58 - 344
Target Start/End: Complemental strand, 4358381 - 4358092
Alignment:
| Q |
58 |
ttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaata |
157 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| |||||||||||||||||| |||||||||||| |||||||| | ||| || | ||| ||||| || || |
|
|
| T |
4358381 |
ttgctcccaaacctccctaatattttcaagaaagctcctaccttcaaaattgcgaccaattttattgtaaatggattttgcaatggtggtttttccgatt |
4358282 |
T |
|
| Q |
158 |
ccccccataccagacatccctagtagtaaaacatcatttgattggc---tgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggat |
254 |
Q |
| |
|
|| ||||| || ||||||||||||||| | |||| |||||||| | | ||| | |||||||||||||||||||||||| | || ||| ||||||| |
|
|
| T |
4358281 |
ccacccatcccccacatccctagtagtagagcatcgtttgattgttgagtttctaggagttgaatcatatcttgcactcgagaatcgactcctactggat |
4358182 |
T |
|
| Q |
255 |
tatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattcctacaaaaaa |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| ||||| |||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
4358181 |
tatcagcaatgaacaagtctgtcttgtcaagcaaacgagtaacattttcaacaatatccctgataacctcactttcattcctacaaaaaa |
4358092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 25 - 337
Target Start/End: Complemental strand, 4342946 - 4342631
Alignment:
| Q |
25 |
aagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttg |
124 |
Q |
| |
|
|||||||| |||||||| ||||||| | | |||||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||||| ||| |
|
|
| T |
4342946 |
aagttgttcttgtaaatacacttgtcctgaaacttgctcccaaacctccctaatatttgcaagaaagctcctggcttcaaaattgcgaccaattttattg |
4342847 |
T |
|
| Q |
125 |
taaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttga---ttggctgtgtagcaattgaatca |
221 |
Q |
| |
|
||||| ||||| || | ||| ||||| || || || ||||| || ||||||||||||||| |||||||||||| ||| ||| || | |||||||| |
|
|
| T |
4342846 |
taaatggcttttgcaatggtggttttccccattccacccatcccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatca |
4342747 |
T |
|
| Q |
222 |
tatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgc |
321 |
Q |
| |
|
|||||||||||||||| | || |||||| |||| |||||||| |||||||||||||||||||| |||||| |||| |||| |||||||| | || | |
|
|
| T |
4342746 |
tatcttgcactcgagaatcgactccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataac |
4342647 |
T |
|
| Q |
322 |
ctcactttcattccta |
337 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4342646 |
ctcactttcattccta |
4342631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 61 - 337
Target Start/End: Complemental strand, 4333520 - 4333241
Alignment:
| Q |
61 |
ctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccc |
160 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||||||| ||| |||| ||||||| |||||||| || || || | || ||||| ||||| || |
|
|
| T |
4333520 |
ctcccaaacctccctaatatttgcaagaaagctcctaccttgaaatttgcggccaattttattgtaaatggccttcgcaattgtggttttcccaatccca |
4333421 |
T |
|
| Q |
161 |
cccataccagacatccctagtagtaaaacatcatttgat---tggctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggattat |
257 |
Q |
| |
|
||||| || |||| ||||| |||| ||| | ||||||| || ||| ||| | ||||||||||||||| |||||||||| || ||| || |||| || |
|
|
| T |
4333420 |
cccatcccccacattcctagcagtagaactttatttgatagttgagtgtctagaagttgaatcatatcttgtactcgagattcgactcctaccggatgat |
4333321 |
T |
|
| Q |
258 |
cagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattccta |
337 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| ||| |||| |||||||||| || |||||||||| |||||| |
|
|
| T |
4333320 |
cagcaatgaacaagtcagtcttgtcaagcaaacgtgcaacattttcaacaatatccttgatgacctcactttcgttccta |
4333241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 146 - 337
Target Start/End: Original strand, 4135663 - 4135857
Alignment:
| Q |
146 |
gttttaccaataccccccataccagacatccctagtagtaaaacatcatttga---ttggctgtgtagcaattgaatcatatcttgcactcgagatttga |
242 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |||||||||||| | | ||| || | ||||||||||||| |||||||||||| || |
|
|
| T |
4135663 |
gttttaccaataccttccataccccacatccctagtagtagaacatcatttgaaaatggagtgtccagtagttgaatcatatctagcactcgagattcga |
4135762 |
T |
|
| Q |
243 |
gtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattccta |
337 |
Q |
| |
|
|| ||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||| |||||||||| || |||||||||| |||||| |
|
|
| T |
4135763 |
ctctaactggatggtcagcaatgaacaggtctgtcttgtcaagcaaatgtgtaactttttcaacaatatccttgatatcctcactttcgttccta |
4135857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 337
Target Start/End: Complemental strand, 4351202 - 4350920
Alignment:
| Q |
58 |
ttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaata |
157 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| || ||||||||||||||| |||| ||||||| |||||||| ||||| || | ||| | ||| || || |
|
|
| T |
4351202 |
ttgctccccaacctccctaatatttgcaagaaaactcctaccttcaaaattgcggccaattttattgtaaatggcttttgcaacggtggatttgccgatt |
4351103 |
T |
|
| Q |
158 |
ccccccataccagacatccctagtagtaaaacatcatttgattgg---ctgtgtagcaattgaatcatatcttgcactcgagatttgagtccgactggat |
254 |
Q |
| |
|
|| ||||| || ||||||||| ||||| |||||| ||||||||| ||| ||| | || ||||||||||||||| |||||| || ||| || |||| |
|
|
| T |
4351102 |
ccacccatcccccacatccctattagtagaacatcttttgattggtgagtgtctagaagtttaatcatatcttgcacctgagattcgactcccacaggat |
4351003 |
T |
|
| Q |
255 |
tatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcctcaattgcctcactttcattccta |
337 |
Q |
| |
|
||||| ||| || |||||| ||||||||| |||||||||| |||| |||||| ||| || ||||||||||||||||| |
|
|
| T |
4351002 |
tatcaacaatgaataagtctatcttgtcaaacaaacgtgtaatattttcaacaatacccttgataacctcactttcattccta |
4350920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 4330493 - 4330201
Alignment:
| Q |
25 |
aagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttg |
124 |
Q |
| |
|
|||||||| |||||||| |||||||||| | |||||||||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||| || |
|
|
| T |
4330493 |
aagttgttcttgtaaatagacttgtctagaaacttgctcccaaacctccctaatatttgcaagaaagctcctaccttcaaaattgcggccaattttatta |
4330394 |
T |
|
| Q |
125 |
taaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgat------tggctgtgtagcaattgaa |
218 |
Q |
| |
|
||||| || || || | ||| |||| || || || ||| | || ||||| ||| |||| ||||||||||||| || ||| ||| | ||||| |
|
|
| T |
4330393 |
taaatggcctttgcaatggtgattttgccgattccacccgtcccccacatctctaagagtagaacatcatttgattgttgatgagtgtctagaagttgaa |
4330294 |
T |
|
| Q |
219 |
tcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatat |
311 |
Q |
| |
|
|||| |||| |||||||||||| | | | || ||||||||||||| || |||||| |||| ||||||||| ||||||| |||| ||||||| |
|
|
| T |
4330293 |
tcatctcttacactcgagatttaatttccaccggattatcagcaatgaataagtctatcttatcaagaaaaagtgtaacattttcaacaatat |
4330201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 6725876 - 6725745
Alignment:
| Q |
61 |
ctcccaaacttccctgatatttgcaatgaagctcctaccttcaaaactgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccc |
160 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| || ||||| ||| |||||||| || ||||| |||||||| | ||| |||||||| ||||| |
|
|
| T |
6725876 |
ctcccaaaattccctgatatttagaacaaagctccttccctcaaatttgctaccaatttgattataaatggctttggcaagggttgttttacccgtaccc |
6725777 |
T |
|
| Q |
161 |
cccataccagacatccctagtagtaaaacatc |
192 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| |
|
|
| T |
6725776 |
cccataccccaaatccctagaagtaaaacatc |
6725745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 336
Target Start/End: Complemental strand, 25567741 - 25567613
Alignment:
| Q |
208 |
tagcaattgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgaca |
307 |
Q |
| |
|
||||| ||||||||||| || |||||||| || | ||| |||||||||| |||||||| ||||| ||||||||| || ||||| | ||||| ||| |
|
|
| T |
25567741 |
tagcagttgaatcatattttccactcgaggttcaactcccactggattattagcaacaagcaagtgtgtcttgtctagcaaacgcacgattttttcaaca |
25567642 |
T |
|
| Q |
308 |
atatcctcaattgcctcactttcattcct |
336 |
Q |
| |
|
||||||| || ||||||||||||||||| |
|
|
| T |
25567641 |
atatccttgatagcctcactttcattcct |
25567613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 29949604 - 29949570
Alignment:
| Q |
565 |
gtcatcaaatggttgtacaaatatcattactcatt |
599 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29949604 |
gtcatcaaatggttgtacaaataccattactcatt |
29949570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 41609591 - 41609558
Alignment:
| Q |
565 |
gtcatcaaatggttgtacaaatatcattactcat |
598 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
41609591 |
gtcatcaaatggttgttcaaatatcattactcat |
41609558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 22586294 - 22586472
Alignment:
| Q |
6 |
ctttaaagatatcagatagaagttgttgttgtaaatcaacttgtctagcaggttgctcccaaacttccctgatatttgcaatgaagctcctaccttcaaa |
105 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| | | ||||||| || ||||| |||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
22586294 |
ctttacagatatcagataaaagttgttcttgtaaaaccatttgtctaccatcttgcttccaaacttccctaatatttgcaaggaagctcctaccttcaaa |
22586393 |
T |
|
| Q |
106 |
actgcgaccaatttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagt |
184 |
Q |
| |
|
||| ||||| | ||||||| |||||| || | ||| ||||| |||| ||||||||||| ||||||||| |||| |
|
|
| T |
22586394 |
ctcgcggccaatcttattgtaaacagcttttgcaatggttgttttgccaaatccccccataccccacatccctactagt |
22586472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 29582311 - 29582277
Alignment:
| Q |
565 |
gtcatcaaatggttgtacaaatatcattactcatt |
599 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29582311 |
gtcatcaaatggttgtacaaataccattactcatt |
29582277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 29611858 - 29611824
Alignment:
| Q |
565 |
gtcatcaaatggttgtacaaatatcattactcatt |
599 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29611858 |
gtcatcaaatggttgtacaaataccattactcatt |
29611824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 116 - 343
Target Start/End: Original strand, 10754 - 10984
Alignment:
| Q |
116 |
atttcgttgtaaatagctttggctaaggtagttttaccaataccccccataccagacatccctagtagtaaaacatcatttgattggc---tgtgtagca |
212 |
Q |
| |
|
||||| |||||||| ||||| || | ||| ||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||| | | ||||| |
|
|
| T |
10754 |
atttctttgtaaattgcttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatttttagca |
10853 |
T |
|
| Q |
213 |
attgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatc |
312 |
Q |
| |
|
| ||||| | | | |||||||||||||| ||| || ||||||||| |||| || ||||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
10854 |
acggaatcgttttgtccactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatg |
10953 |
T |
|
| Q |
313 |
ctcaattgcctcactttcattcctacaaaaa |
343 |
Q |
| |
|
|| |||||||| ||||||||||| ||||| |
|
|
| T |
10954 |
atcgattgcctccgtttcattcctataaaaa |
10984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 48015496 - 48015624
Alignment:
| Q |
215 |
tgaatcatatcttgcactcgagatttgagtccgactggattatcagcaacaaacaagtctgtcttgtcaagaaaacgtgtaacttttttgacaatatcct |
314 |
Q |
| |
|
|||||||||||| |||||| ||||| | || |||| ||||| ||||| ||||||||||||||||||||| || ||||||| |||| |||||||| | |
|
|
| T |
48015496 |
tgaatcatatctcgcactcaagattcaatccccactgaattattagcaataaacaagtctgtcttgtcaagcaatcgtgtaatattttcaacaatatctt |
48015595 |
T |
|
| Q |
315 |
caattgcctcactttcattcctacaaaaa |
343 |
Q |
| |
|
||| |||| |||||||||||||||||| |
|
|
| T |
48015596 |
taataacctcgctttcattcctacaaaaa |
48015624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 596
Target Start/End: Complemental strand, 8317984 - 8317954
Alignment:
| Q |
566 |
tcatcaaatggttgtacaaatatcattactc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8317984 |
tcatcaaatggttgtacaaatatcattactc |
8317954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 603
Target Start/End: Complemental strand, 41877713 - 41877681
Alignment:
| Q |
571 |
aaatggttgtacaaatatcattactcatttaga |
603 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
41877713 |
aaatggttgtacaaatatcatttctcatttaga |
41877681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 40723385 - 40723351
Alignment:
| Q |
565 |
gtcatcaaatggttgtacaaatatcattactcatt |
599 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40723385 |
gtcatcaaatgattgtacaaatatcattactcatt |
40723351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 604
Target Start/End: Original strand, 34247936 - 34247965
Alignment:
| Q |
575 |
ggttgtacaaatatcattactcatttagaa |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34247936 |
ggttgtacaaatatcattactcatttagaa |
34247965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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