View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11300_low_15 (Length: 251)

Name: NF11300_low_15
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11300_low_15
NF11300_low_15
[»] chr7 (1 HSPs)
chr7 (5-251)||(39955105-39955341)
[»] chr3 (4 HSPs)
chr3 (206-251)||(25084915-25084960)
chr3 (206-251)||(21584857-21584902)
chr3 (206-251)||(24920146-24920191)
chr3 (206-251)||(24981923-24981968)
[»] chr8 (1 HSPs)
chr8 (206-251)||(14261292-14261337)
[»] chr2 (1 HSPs)
chr2 (209-251)||(41027452-41027494)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 39955341 - 39955105
Alignment:
Q  5 acgacacggatcgccatcttcatccgttgattaaattataatcaacggctaacacgtcccatccaactcgcaata--cttcaaatattcgtataaaatcc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||    
T  39955341 acgacacggatcgccatcttcatccgttgattaaattataatcaacggctaacacgtcccatccaactcgcaatactcttcaaatcttcgtataaaagcc 39955242  T
Q  103 gaattgaggaaacagcat--cacacattcaaaaattaatcttcttcttcaaatcttgtagtaatttcataatcttaagaaaaatccattttcttcattct 200  Q
     |||||||||||||||||  ||||||||||||||| |||||||              |||||||||||||||||||||||||||||||||||||||||||    
T  39955241 taattgaggaaacagcatcacacacattcaaaaatcaatcttc--------------tagtaatttcataatcttaagaaaaatccattttcttcattct 39955156  T
Q  201 ctgcaaaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39955155 ctgcaaaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 39955105  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 25084915 - 25084960
Alignment:
Q  206 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 251  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  25084915 aaaatgtcaggtcgtggaaagggaggtaagggattgggaaagggag 25084960  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 21584902 - 21584857
Alignment:
Q  206 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 251  Q
    |||||||||||||||||||| ||||| |||||| | ||||||||||    
T  21584902 aaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggag 21584857  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 24920191 - 24920146
Alignment:
Q  206 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 251  Q
    |||||||| || |||||||| ||||| |||||||||||||||||||    
T  24920191 aaaatgtctggccgtggaaagggaggtaagggattgggaaagggag 24920146  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 24981923 - 24981968
Alignment:
Q  206 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 251  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||    
T  24981923 aaaatgtcagggcgtggaaaaggaggtaagggactaggaaagggag 24981968  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 14261337 - 14261292
Alignment:
Q  206 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 251  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||    
T  14261337 aaaatgtcaggtcgtggaaagggaggtaagggattaggaaagggag 14261292  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 41027452 - 41027494
Alignment:
Q  209 atgtcaggtcgtggaaaaggaggaaagggattgggaaagggag 251  Q
    ||||| || ||||||||||| ||||||||||||||||||||||    
T  41027452 atgtctggacgtggaaaaggtggaaagggattgggaaagggag 41027494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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