View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11300_low_18 (Length: 245)
Name: NF11300_low_18
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 30810542 - 30810322
Alignment:
| Q |
13 |
catgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataagt |
112 |
Q |
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| T |
30810542 |
catgtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagt |
30810443 |
T |
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| Q |
113 |
aaataaatgttga--agagtttttatagtgtaaaagaaatttgaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacat |
208 |
Q |
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| T |
30810442 |
aaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacat |
30810343 |
T |
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| Q |
209 |
ttaatgtgaggggagattgtg |
229 |
Q |
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| T |
30810342 |
ttaatgtgaggggagattgtg |
30810322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30815027 - 30814920
Alignment:
| Q |
1 |
attaggatatatcatgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaa |
100 |
Q |
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| T |
30815027 |
attagcatatatcatgtattcata-atctagtcgtgagtcattgttgtgtcaatattatattataatcatttgttaaaagaa-gaccaatcaatattgaa |
30814930 |
T |
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| Q |
101 |
gatagaataa |
110 |
Q |
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| T |
30814929 |
aataaaataa |
30814920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 30820209 - 30820124
Alignment:
| Q |
26 |
atatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
111 |
Q |
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| T |
30820209 |
atatagccgtgagtcactgttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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