View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11300_low_19 (Length: 241)

Name: NF11300_low_19
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11300_low_19
NF11300_low_19
[»] chr1 (8 HSPs)
chr1 (19-240)||(15800434-15800655)
chr1 (27-237)||(15830026-15830236)
chr1 (27-237)||(15831754-15831964)
chr1 (27-237)||(15833481-15833691)
chr1 (19-177)||(15828392-15828550)
chr1 (111-240)||(15820897-15821026)
chr1 (71-112)||(46621543-46621584)
chr1 (71-112)||(46627276-46627317)
[»] scaffold0563 (6 HSPs)
scaffold0563 (27-237)||(10219-10429)
scaffold0563 (27-237)||(537-747)
scaffold0563 (27-199)||(5198-5370)
scaffold0563 (27-199)||(7392-7564)
scaffold0563 (27-237)||(1601-1811)
scaffold0563 (27-237)||(3370-3580)
[»] scaffold0492 (2 HSPs)
scaffold0492 (27-237)||(579-789)
scaffold0492 (22-199)||(1594-1772)
[»] scaffold0754 (1 HSPs)
scaffold0754 (27-237)||(3687-3897)
[»] scaffold0543 (1 HSPs)
scaffold0543 (27-237)||(54-264)
[»] chr5 (7 HSPs)
chr5 (19-235)||(37328180-37328396)
chr5 (26-197)||(22654140-22654311)
chr5 (71-199)||(37224939-37225068)
chr5 (71-199)||(38848947-38849075)
chr5 (71-199)||(38750027-38750155)
chr5 (71-103)||(38865933-38865965)
chr5 (71-103)||(39310679-39310711)
[»] chr7 (1 HSPs)
chr7 (71-112)||(37147554-37147595)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 15800434 - 15800655
Alignment:
Q  19 ccctctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagac 118  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15800434 ccctctcgtctaggaaccaagagacataggccttcgcacaagtcccgtggaccaactctcaacttggagcgggcaggccagcatattgcagccaacagac 15800533  T
Q  119 cagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagact 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||    
T  15800534 cagcccaacaagccgtagccatgttccatcactctaatgctcccactcgggtcacaagttggcgctacccaactcagcaaactgcctagcttctcagact 15800633  T
Q  219 tttatatagagttgattttgtt 240  Q
    |||||||||| |||||||||||    
T  15800634 tttatatagacttgattttgtt 15800655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 15830026 - 15830236
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  15830026 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 15830125  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  15830126 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 15830225  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  15830226 gacttgatttt 15830236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 15831754 - 15831964
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  15831754 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 15831853  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||| ||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  15831854 caagccgtagccacgttccatcactttggtgctcccccttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 15831953  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  15831954 gacttgatttt 15831964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 15833481 - 15833691
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  15833481 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 15833580  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||| ||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  15833581 caagccgtagccacgttccatcactttggtgctcccccttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 15833680  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  15833681 gacttgatttt 15833691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 15828392 - 15828550
Alignment:
Q  19 ccctctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagac 118  Q
    |||||||||||||||||||| ||||||  |||||||| ||||||| ||||  |||||||||||||||||||||||| ||||||||||| ||| ||| |||    
T  15828392 ccctctcatctaggaaccaatagacatcggccttcgcccatgtcccgtggcacaactctcaacttggagcgggcagaccagcatattgaagctaactgac 15828491  T
Q  119 cagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagt 177  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||||  ||||||||||    
T  15828492 cagcccaacaagctgtagccatgttccatcacattaatgctcccacttgggtcacaagt 15828550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 15820897 - 15821026
Alignment:
Q  111 caacagaccagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagctt 210  Q
    |||||||||| ||||||||| | ||||||||||| |||| || |||||| |||||  ||| ||||||||||||||||||||||| |||| |  ||||| |    
T  15820897 caacagaccaacccaacaagccatagccatgttcaatcattcaaatgcttccacttgggttacaagttggcgctacccaactcaacaaacttccaagcct 15820996  T
Q  211 ctcagacttttatatagagttgattttgtt 240  Q
     ||||| | || |||||| |||||| ||||    
T  15820997 gtcagattattgtatagacttgattgtgtt 15821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 46621543 - 46621584
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagcca 112  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  46621543 caactctcaacttggagtgggcaggccagcatggtgcagcca 46621584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 46627276 - 46627317
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagcca 112  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  46627276 caactctcaacttggagcgggcaggccggcatggtgcagcca 46627317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 10429 - 10219
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  10429 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 10330  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  10329 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 10230  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  10229 gacttgatttt 10219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 747 - 537
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  747 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 648  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||| ||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  647 caagccgtagccacgttccatcactttggtgctcccccttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 548  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  547 gacttgatttt 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 5198 - 5370
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||  |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  5198 tctagggaccaagagacatagaccttcacccatgtcccgaggcacaactctcaacttggagcgggcaggccaacatattgcagctaacagaccagccaaa 5297  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaa 199  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||    
T  5298 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaa 5370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 7564 - 7392
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||  |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  7564 tctagggaccaagagacatagaccttcacccatgtcccgaggcacaactctcaacttggagcgggcaggccaacatattgcagctaacagaccagccaaa 7465  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaa 199  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||    
T  7464 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaa 7392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 1601 - 1811
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||   ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  1601 tctagggaccaagagacatagaccttcacccatgtcccgaggcaaaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 1700  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    ||||  ||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  1701 caagcggtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 1800  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  1801 gacttgatttt 1811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 3370 - 3580
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| | ||   ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  3370 tctagggaccaagagacatagaccttcacccatgtcccgaggcaaaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 3469  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    ||||  ||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  3470 caagcggtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 3569  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  3570 gacttgatttt 3580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 789 - 579
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| |||||||||||||  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  789 tctagggaccaagagacatagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 690  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||   |||||| | | ||| | |||||||    
T  689 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaacaatcaagcatgttagattgttatata 590  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  589 gacttgatttt 579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 1594 - 1772
Alignment:
Q  22 tctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttgg-agcgggcaggccagcatattgcagccaacagacca 120  Q
    |||| |||||| |||||||||||||  ||||| | ||||||| | ||  ||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  1594 tctcttctagggaccaagagacatagaccttcacccatgtcccgaggcacaactctcaacttgggagcgggcaggccaacatattgcagctaacagacca 1693  T
Q  121 gcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaa 199  Q
    ||| |||||| |||||||| ||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||    
T  1694 gccaaacaagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctacccaactcagcaaa 1772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 3897 - 3687
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| ||||||||||| |  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  3897 tctagggaccaagagacagagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 3798  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  |||||||||||||||||| |||||||||||||   |||||| | | ||| | |||||||    
T  3797 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctatccaactcagcaaacaatcaagcatgttagattgttatata 3698  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  3697 gacttgatttt 3687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 54 - 264
Alignment:
Q  27 tctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaa 126  Q
    |||||| ||||||||||| |  ||||| | ||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  54 tctagggaccaagagacagagaccttcacccatgtcccgtggcacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaa 153  T
Q  127 caagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagacttttatata 226  Q
    |||| |||||||| ||||||||||| |  ||||||||||  |||||||||||||||||| |||||||||||||   |||||| | | ||| | |||||||    
T  154 caagccgtagccacgttccatcactttggtgctcccacttgggtcacaagttggcgctatccaactcagcaaacaatcaagcatgttagattgttatata 253  T
Q  227 gagttgatttt 237  Q
    || ||||||||    
T  254 gacttgatttt 264  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 37328180 - 37328396
Alignment:
Q  19 ccctctcatctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagac 118  Q
    ||||||| |||||||||||||||||  | |||||||| ||  ||| ||||  ||||||||||||||||| ||||| |||| ||||||||||  | ||| |    
T  37328180 ccctctcgtctaggaaccaagagaccaaggccttcgcccaaatcccgtggcccaactctcaacttggagagggcaagccaacatattgcagaaaccagcc 37328279  T
Q  119 cagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagcaaattgtcaagcttctcagact 218  Q
    |||||||||||| | ||||||||| |||  ||| || |||||||||   ||| |||||||| ||||||||||||||||||| |  || |||| ||||||     
T  37328280 cagcccaacaagccatagccatgtcccaatactttagtgctcccacatgggtgacaagttgacgctacccaactcagcaaactcacaggcttgtcagaca 37328379  T
Q  219 tttatatagagttgatt 235  Q
     ||||||||| ||||||    
T  37328380 gttatatagacttgatt 37328396  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 22654311 - 22654140
Alignment:
Q  26 atctaggaaccaagagacataagccttcgcacatgtccggtggatcaactctcaacttggagcgggcaggccagcatattgcagccaacagaccagccca 125  Q
    ||||||||||||||||||  | |||||||| ||  ||| ||||  |||||||||||||||||||||||  ||| ||||||||||  | ||  | ||| ||    
T  22654311 atctaggaaccaagagaccaaggccttcgcccaaatcccgtggcccaactctcaacttggagcgggcaaaccaacatattgcagaaaccaacctagctca 22654212  T
Q  126 acaagacgtagccatgttccatcactctaatgctcccactcaggtcacaagttggcgctacccaactcagca 197  Q
    ||||| | ||| ||||| | || ||  || ||||||||||  ||| |||||||| |||||||||||||||||    
T  22654211 acaagccatagtcatgtcctataaccttagtgctcccacttgggtgacaagttgacgctacccaactcagca 22654140  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 37225068 - 37224939
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagccaacagaccagccca-acaagacgtagccatgttccatcactctaatgctcccactcagg 169  Q
    |||||||||||||||||||| || |||||||||||||||  | |||  ||||| | ||||| | ||||||||| |||| | | || ||||| ||||  ||    
T  37225068 caactctcaacttggagcggacaagccagcatattgcagaaaccagctcagccaagacaagccatagccatgtcccattattttagtgctctcacttggg 37224969  T
Q  170 tcacaagttggcgctacccaactcagcaaa 199  Q
    || ||||||||| |||||||||||||||||    
T  37224968 tcccaagttggcactacccaactcagcaaa 37224939  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 38848947 - 38849075
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggt 170  Q
    ||||||||||||||||||||||||||||||||| || | || |||| ||| ||    |||||  ||||||||||||||||  | ||||||||||   |||    
T  38848947 caactctcaacttggagcgggcaggccagcatagtgtatcctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggt 38849046  T
Q  171 cacaagttggcgctacccaactcagcaaa 199  Q
     ||||||||| | ||  ||||||||||||    
T  38849047 tacaagttggtgttaatcaactcagcaaa 38849075  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 38750155 - 38750027
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaacaagacgtagccatgttccatcactctaatgctcccactcaggt 170  Q
    ||||||||||||||||| ||||||||||||||| || | || |||| ||| ||    |||||  ||||||||||||||||  | ||||||||||   |||    
T  38750155 caactctcaacttggagtgggcaggccagcataatgtaccctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggt 38750056  T
Q  171 cacaagttggcgctacccaactcagcaaa 199  Q
     ||||||||| | ||  ||||||||||||    
T  38750055 tacaagttggtgttattcaactcagcaaa 38750027  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 38865933 - 38865965
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcata 103  Q
    ||||||||||||||||| |||||||||||||||    
T  38865933 caactctcaacttggagtgggcaggccagcata 38865965  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 39310679 - 39310711
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcata 103  Q
    ||||||||||||||||| |||||||||||||||    
T  39310679 caactctcaacttggagtgggcaggccagcata 39310711  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 37147595 - 37147554
Alignment:
Q  71 caactctcaacttggagcgggcaggccagcatattgcagcca 112  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  37147595 caactctcaacttggagtgggcaggccagcatggtgcagcca 37147554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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