View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11300_low_2 (Length: 652)

Name: NF11300_low_2
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11300_low_2
NF11300_low_2
[»] chr8 (1 HSPs)
chr8 (18-635)||(9545240-9545857)
[»] chr7 (1 HSPs)
chr7 (212-351)||(40393678-40393817)


Alignment Details
Target: chr8 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Original strand, 9545240 - 9545857
Alignment:
Q  18 catcaaaataaacaccggcatcattacaaacagcacatatttccgccatggctaacaagttagcatccatgttatagcaagtccaatcaacaatccctcc 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545240 catcaaaataaacaccggcatcattacaaacagcacaaatttccgccatggctaacaagttagcatccatgttatagcaagtccaatcaacaatccctcc 9545339  T
Q  118 atcttttggatcatatgttgtcccttcaacactaatgactctacaagcagttgttttccctcccaaagtaaagaactccgtcgcagacatttgatttgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545340 atcttttggatcatatgttgtcccttcaacactaatgactctacaagcagttgttttccctcccaaagtaaagaactccgtcgcagacatttgatttgta 9545439  T
Q  218 gtcagtgtaccggttttatctgaacaaatcacagtggtacatcccaaagtttcaacacttggaagctttctcacaattgcattcttttgtgccattttcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545440 gtcagtgtaccggttttatctgaacaaatcacagtggtacatcccaaagtttcaacacttggaagctttctcacaattgcattcttttgtgccattttcc 9545539  T
Q  318 ttgtaccaagtgctaaacaagttgtaataaccgccggaagaccttctggaattgcagccacagcaagagcaacagcaattttgaaatagtaagtgcattt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545540 ttgtaccaagtgctaaacaagttgtaataaccgccggaagaccttctggaattgcagccacagcaagagcaacagcaattttgaaatagtaagtgcattt 9545639  T
Q  418 ctgaaaagaaaattgaatgtttgtaggccatccatcaacaacatcccaagatatgaaatttttgtagtttataatccaaacaacaagacaaactattcca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545640 ctgaaaagaaaattgaatgtttgtaggccatccatcaacaacatcccaagatatgaaatttttgtagtttataatccaaacaacaagacaaactattcca 9545739  T
Q  518 atagaagttgtaagcctgccaccaaattcgtctaacttcttcttcaagggagtatcgctttcctccaacgaagcctcgtgtatttgcttctgtatctttc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545740 atagaagttgtaagcctgccaccaaattcgtctaacttcttcttcaagggagtatcgctttcctccaacgaagcctcgtgtatttgcttctgtatctttc 9545839  T
Q  618 cgatttcggtgttcattg 635  Q
    ||||||||||||||||||    
T  9545840 cgatttcggtgttcattg 9545857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 351
Target Start/End: Original strand, 40393678 - 40393817
Alignment:
Q  212 tttgtagtcagtgtaccggttttatctgaacaaatcacagtggtacatcccaaagtttcaacacttggaagctttctcacaattgcattcttttgtgcca 311  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || || ||||  |||||||||||||| ||||| || || |  |||||||| || ||||    
T  40393678 tttgtagtcagtgtaccagttttatcagaacatatcacagttgtgcaacccagggtttcaacacttggtagcttcctaaccagggcattcttctgggcca 40393777  T
Q  312 ttttccttgtaccaagtgctaaacaagttgtaataaccgc 351  Q
    |||| |  ||||||||||| | |||||| ||||| |||||    
T  40393778 ttttgcgagtaccaagtgcgagacaagtcgtaatgaccgc 40393817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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