View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11300_low_4 (Length: 600)
Name: NF11300_low_4
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 362
Target Start/End: Complemental strand, 17232035 - 17231697
Alignment:
| Q |
3 |
tttgtcaacaaggaggttttcggacgtcaaaatccctatgaactatcataggagtttctagttatgatcttaattccatagcagcatagatgtttaatgt |
102 |
Q |
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| T |
17232035 |
tttgtcaaccaggaggtttttggacgtcaaaatccctatgaactatcataggagtttctaattatgatcttaattccatagcagcatagatgtttaatgt |
17231936 |
T |
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| Q |
103 |
aataggtgaaaactgacatttaacaagtgaaaacagaagaacaaaatgtgtagaaatgtaccaagagaatcagaaaggaggaacttttggatgaagttga |
202 |
Q |
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| T |
17231935 |
aata---------------------agtgaaaacagaagaacaaaatgtgtagaaatgtaccaagagaatcagaaaggaggaacttttggatgaagttga |
17231857 |
T |
|
| Q |
203 |
aatctgttttgaaaaagatagaggataaggtataaggttccttcatgttgatcacaatcgaatctatctagcattccaaaatcattactattttttatct |
302 |
Q |
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| T |
17231856 |
aatctgttttgaaaaatatagaggataaggtataaggttccttcatgttgatcataatcgaatctatctagcattccaaaatcattactattttttatgt |
17231757 |
T |
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| Q |
303 |
tgcataatatgatgatcacaaaatatgctagagtctaaaagtcataactacagaacacag |
362 |
Q |
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| T |
17231756 |
tgcataatatgatgatcacaaaatatgctagagtctaaaagtcataactactgaacacag |
17231697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 356 - 560
Target Start/End: Complemental strand, 17230851 - 17230647
Alignment:
| Q |
356 |
aacacaggaattgccaaagatcgaaaagaagacaaagttagttcatgttaatagaggtagaagtatcagaacttaacttcccagagcaactacagatggt |
455 |
Q |
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| T |
17230851 |
aacacaagaattgccaaagatcgaaaagaagacaaagttagttcatgttaatagaggtagaagtatcagaacttaacttcccagagcaactacagatggt |
17230752 |
T |
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| Q |
456 |
tgtggatatgagcattttcagatttttagggggtcttaacagcaatttccaagcataataggcaaagcccattttttatggcagatcgcaattgagtaaa |
555 |
Q |
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| T |
17230751 |
tgtggatatgagcattttcagatttttagggggtcttaacagcaatttccaagcataataggcaaagcccattttttatggcagatcgcaattgagtaga |
17230652 |
T |
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| Q |
556 |
attta |
560 |
Q |
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| T |
17230651 |
attta |
17230647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 8275113 - 8275034
Alignment:
| Q |
85 |
agcatagatgtttaatgtaataggtgaaaactgacatttaacaagtgaaaacagaagaacaaaatgtgtagaaatgtacc |
164 |
Q |
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| T |
8275113 |
agcatatatgtctaatgtaataagtgaaaactgacatttaccaagtgaaaacagaagaacaaaatgtgtagaaatgtacc |
8275034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 1250879 - 1250842
Alignment:
| Q |
126 |
caagtgaaaacagaagaacaaaatgtgtagaaatgtac |
163 |
Q |
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| T |
1250879 |
caagtgaaaacataagaacaaaatgtgtagaaatgtac |
1250842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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