View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11300_low_5 (Length: 532)
Name: NF11300_low_5
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Complemental strand, 35034076 - 35033561
Alignment:
| Q |
12 |
catcatccaaaatgtcttcatcgctttcaactcggataactattttttgcccgacatctgtcatggggcaaggtggtttatagcattcagagaagtccct |
111 |
Q |
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| T |
35034076 |
catcatccaaaatgtcttcatcgctttcaactcggatcactattttttgcccggcatctgtcatggggcaaggtgttttatagcattcagagaagtccct |
35033977 |
T |
|
| Q |
112 |
ctttctcttcctgcattgcaaaacaattgagnnnnnnnnnnn-gttaacctttatttatcagcaac----tgtgtatgtgtgtgcgctcgtgtgtctata |
206 |
Q |
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| T |
35033976 |
ctttctcttcctgcattgcaaaacaattgagcaaaaaaaaaaagttaacctttatttatcagcaacaatgtgtgtatgtgtgtgcgctcgtgtgtctata |
35033877 |
T |
|
| Q |
207 |
tatat--tcacactatcaaaatgattataaaacctttgtggacaagatccactagcaccaccatcatcatattgaagtaacatcattcctccaatggcag |
304 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35033876 |
tatatattcacactatcaaaatgattataaaacctttgtggacaagatccactagcaccaccatcatcatattgaagcaacatcattcctccaatggcag |
35033777 |
T |
|
| Q |
305 |
ttgcttcatcatccgcaggtgtatctaaaacttgatcatcagttggtacatttgtttctttatcatcagttatactatcttctttggcatgcactgcttc |
404 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35033776 |
ttgcttcatcatccgcaggtgtatctgaaacttgaccatcagttggtacatttgtttctttatcatcagttatactatcttctttggcatgcactgcttc |
35033677 |
T |
|
| Q |
405 |
agaaaagttcattggcatcttctctttcctagcccttagaatttcagcatttttcaccactacatttgcttcattttgcacatggtcttgttcttcttct |
504 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35033676 |
agaaaagttcattggcatcttccctttcctagcccttagaatttcagcatttttcaccactacatttgcatcattttgcacatggtcttgttcttcttct |
35033577 |
T |
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| Q |
505 |
gcaccatgtctttgat |
520 |
Q |
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| T |
35033576 |
gcaccatgtctttgat |
35033561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 32570957 - 32570914
Alignment:
| Q |
477 |
attttgcacatggtcttgttcttcttctgcaccatgtctttgat |
520 |
Q |
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| T |
32570957 |
attttgcacatgggcttgttcttcttctgcaccatgtccttgat |
32570914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 32571192 - 32571116
Alignment:
| Q |
236 |
acctttgtggacaagatccactagcaccaccatcatcatattgaagtaacatcattcctccaatggcagttgcttca |
312 |
Q |
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||||||||| | ||||||||||||||| | ||||| | |||||| |||||||||||| |||||| | |||||||| |
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| T |
32571192 |
acctttgtgaagaagatccactagcactagtatcattgtgttgaagcaacatcattccttcaatggaacttgcttca |
32571116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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