View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11300_low_6 (Length: 380)
Name: NF11300_low_6
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 53328773 - 53329140
Alignment:
| Q |
1 |
gatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53328773 |
gatctttcttgagaatgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagagg |
53328872 |
T |
|
| Q |
101 |
cagggaaggactctttacggattcgggggttagggtttcttgtattgaaaatttcaaatttgatatatatattttgtaaccgcacttgagctctagcatt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53328873 |
cagggaaggactctttacggtttcgggggttagggtttcttgtattgaaattttcaaatttgatatatatattttgtaaccgcacttgagctctagcatt |
53328972 |
T |
|
| Q |
201 |
aacgatggttaattgctttgataagagttgttaaacgttgatttgaattttcaatccagtaattaatttcatgaatttttgttatctgtttctttcttc- |
299 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53328973 |
aacgatgattaattgctttgataagagttgttaaacgttgatttgaattttcaatccagtaattaatttcatgaatttttgttatctgtttcttttttct |
53329072 |
T |
|
| Q |
300 |
-nnnnnnnngcgaaagaacttaaaactgtgctggcgcttaactaattgaacctttaaaatgttgatta |
366 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
53329073 |
tctttttttgcgaaagaacctaaaactgtgctgtcgcttaactaattaaacctttaaaatgttgatta |
53329140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 22898622 - 22898751
Alignment:
| Q |
11 |
gagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaagga |
110 |
Q |
| |
|
|||||||||||| | ||||| || || ||||| ||||| ||| | | ||||| |||||||| |||||||| ||||| || |||||||| |||||||| | |
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| T |
22898622 |
gagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaa |
22898721 |
T |
|
| Q |
111 |
ctctttacggattcgggggttagggtttct |
140 |
Q |
| |
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| ||||||||||| |||||||||||||||| |
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| T |
22898722 |
ccctttacggatttgggggttagggtttct |
22898751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 22950290 - 22950419
Alignment:
| Q |
11 |
gagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaagga |
110 |
Q |
| |
|
|||||||||||| | ||||| || || ||||| ||||| ||| | | ||||| |||||||| |||||||| ||||| || |||||||| |||||||| | |
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| T |
22950290 |
gagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaa |
22950389 |
T |
|
| Q |
111 |
ctctttacggattcgggggttagggtttct |
140 |
Q |
| |
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| ||||||||||| |||||||||||||||| |
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|
| T |
22950390 |
ccctttacggatttgggggttagggtttct |
22950419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39954968 - 39954837
Alignment:
| Q |
1 |
gatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||| ||||||||| | | || |||||||| || ||||||||||| || |||||||||||| |
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| T |
39954968 |
gatctttcttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagagg |
39954869 |
T |
|
| Q |
101 |
cagggaaggactctttacggattcgggggtta |
132 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||| |
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| T |
39954868 |
cagggaaggactctctacggtttcggtggtta |
39954837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 26358667 - 26358538
Alignment:
| Q |
5 |
tttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| || |||||||| || || || |||||||| |||||||||||||| || ||||||||||| | |
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| T |
26358667 |
tttcttgagaatgttattcgtgatgctgtcacttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgtttatgcgctcaagaggcaag |
26358568 |
T |
|
| Q |
105 |
gaaggactctttacggattcgggggttagg |
134 |
Q |
| |
|
||||||| ||||| || || |||||||||| |
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| T |
26358567 |
gaaggaccctttatggttttgggggttagg |
26358538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 41483110 - 41483052
Alignment:
| Q |
222 |
taagagttgttaaacgttgatttgaattttcaatccagtaattaatttcatgaattttt |
280 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41483110 |
taagagttgttaatcgttgatttgaattttcaatccagtaattaatttcatcaattttt |
41483052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 41483157 - 41483116
Alignment:
| Q |
130 |
ttagggtttcttgtattgaaaatttcaaatttgatatatata |
171 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41483157 |
ttagggtttcttgtattgaaaatttcaaagttgatatatata |
41483116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 41027631 - 41027769
Alignment:
| Q |
1 |
gatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagagg |
100 |
Q |
| |
|
||||||| | |||||||| ||||||||||| || || ||||||||||| ||| | | |||||||||||||| |||||||||||||| || | ||||| |
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| T |
41027631 |
gatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagaga |
41027730 |
T |
|
| Q |
101 |
cagggaaggactctttacggattcgggggttagggtttc |
139 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||||||||||| |
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| T |
41027731 |
caaggaaggactctttatggatttgggggttagggtttc |
41027769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 30012096 - 30012205
Alignment:
| Q |
25 |
tgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggattc |
124 |
Q |
| |
|
|||||| || || ||||| || || ||||| || ||||| || ||||| |||||||| ||||| || ||||||||||| |||||||| ||||| || || |
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| T |
30012096 |
tgatgctgttacttacactgaacacgctcgtcgcaagacagtgactgctatggatgtggtttatgcgctcaagaggcaaggaaggaccctttatggtttt |
30012195 |
T |
|
| Q |
125 |
gggggttagg |
134 |
Q |
| |
|
||| |||||| |
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|
| T |
30012196 |
gggtgttagg |
30012205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 21584710 - 21584590
Alignment:
| Q |
11 |
gagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaagga |
110 |
Q |
| |
|
|||||||||||||||||||| || || ||||| |||||||| | | |||||||| ||||| |||||||||||||| ||| | |||||||| ||||| | |
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| T |
21584710 |
gagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaa |
21584611 |
T |
|
| Q |
111 |
ctctttacggattcgggggtt |
131 |
Q |
| |
|
| ||||| |||||||| |||| |
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|
| T |
21584610 |
cgctttatggattcggaggtt |
21584590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 31825670 - 31825550
Alignment:
| Q |
11 |
gagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaagga |
110 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||| ||| | | ||||| ||||| || ||||||||||| || ||| | |||||||||||||| | |
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|
| T |
31825670 |
gagaatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaa |
31825571 |
T |
|
| Q |
111 |
ctctttacggattcgggggtt |
131 |
Q |
| |
|
| || || |||||||| |||| |
|
|
| T |
31825570 |
ccctctatggattcggaggtt |
31825550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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