View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11300_low_8 (Length: 318)
Name: NF11300_low_8
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 5692914 - 5692615
Alignment:
| Q |
1 |
gtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692914 |
gtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaaga |
5692815 |
T |
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| Q |
101 |
agacagacaagtcgctgaaatggagagacgcgcttagtgaggttgctgggcttgctggctttgtagttccaaatttcaggtagtttcattcaactattgc |
200 |
Q |
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| T |
5692814 |
agacagacaagtcgctgaaatggagagacgcgcttagtgaggttgctgggcttgctggctttgtagttccaaatttcaggtagtttcattcaactattgc |
5692715 |
T |
|
| Q |
201 |
aatcattcagaggcttaaactcatttttggttccctaaatttgttaaaattataattttgcccccgattaataaaacaacatttttgtcctctaactttg |
300 |
Q |
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| T |
5692714 |
aatcattcagaggcttaaactcatttttggttccctaaatttgttaaaattataattttgcccccgattaataaaacaacatttttgtcctctaactttg |
5692615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 5174256 - 5174417
Alignment:
| Q |
1 |
gtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174256 |
gtgttgccggtgttctatgatgttgatccttcggatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaaga |
5174355 |
T |
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| Q |
101 |
agacagacaagtcgctgaaatggagagacgcgcttagtgaggttgctgggcttgctggcttt |
162 |
Q |
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| T |
5174356 |
agaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggcttt |
5174417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 5276002 - 5276129
Alignment:
| Q |
1 |
gtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5276002 |
gtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaaga |
5276101 |
T |
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| Q |
101 |
agacagacaagtcgctgaaatggagaga |
128 |
Q |
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| T |
5276102 |
agaaaagcacgtccctgaaattgagaga |
5276129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 5276130 - 5276264
Alignment:
| Q |
60 |
tggaaaagcgttccaaagtctcttgagcagaatttcaaagaagacagacaagtcgctgaaatggagagacgcgcttagtgaggttgctgggcttgctggc |
159 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | || || |||||||||||||| || ||| |||||||||||| | |||||||| |
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| T |
5276130 |
tggaaaagcgttccaaagtctcttgagcagaattttaaagaagaaaagcacatccctgaaatggagagatgcacttcgtgaggttgctgagattgctggc |
5276229 |
T |
|
| Q |
160 |
tttgtagttccaaatttcaggtagtttcattcaac |
194 |
Q |
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| T |
5276230 |
tttgtagttccaaatttcaggtaatttaattcaac |
5276264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 5380485 - 5380663
Alignment:
| Q |
7 |
ccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttc---aaagaaga |
103 |
Q |
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||||||||||||||||||||||| | || ||||| |||||||| |||||||||||| |||| || ||||||||||||||| | |||| ||||||| |
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| T |
5380485 |
ccggtgttctatgatgttgatcccttggaggtacgtcaccaaactggtgagtttggacaagcttttgaaagtctcttgagcaaactttcgaagaagaaga |
5380584 |
T |
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| Q |
104 |
cagacaagtcgctgaaatggagagacgcgcttagtgaggttgctgggcttgctggctttgtagttccaaatttcaggta |
182 |
Q |
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| T |
5380585 |
aagataagacgctgaaatggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggta |
5380663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 5149690 - 5149595
Alignment:
| Q |
4 |
ttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaag |
99 |
Q |
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| T |
5149690 |
ttgccagtgttttatgatgtagatccatgtgaagtacgtcaccaaacaagtgagtttggcaaagcatttcaaagtctcttgaatagaatttcaaag |
5149595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 5107765 - 5107707
Alignment:
| Q |
7 |
ccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaa |
65 |
Q |
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| T |
5107765 |
ccggtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttggaaa |
5107707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 5340679 - 5340758
Alignment:
| Q |
13 |
ttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaat |
92 |
Q |
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||||| ||||||||||| ||||| |||| || |||||||| |||||||||||||| || |||| ||| |||| |||||| |
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| T |
5340679 |
ttctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttgaacagaat |
5340758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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