View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11300_low_9 (Length: 305)
Name: NF11300_low_9
Description: NF11300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11300_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 17232129 - 17232395
Alignment:
| Q |
23 |
tgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatacgtaccttactcatagaacagacatggga |
122 |
Q |
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| T |
17232129 |
tgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatacgtaccttactcatagaacagacatggga |
17232228 |
T |
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| Q |
123 |
acagtaagctatcgtaattttttattaatcaattcattttttatatcctcctgattgaatgttcatgttacatatttttcgggctcggtggatggctccc |
222 |
Q |
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| T |
17232229 |
acagtaagctatcgtaattttttattaatcaattcattttttatatcctcctgattgaatgttcatgttacatatttttcggcctcagtggatggctccc |
17232328 |
T |
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| Q |
223 |
gaagtattgcaaagtgaactgtatgatgaaaagtaagcttgttattctttgtatttattattatgtt |
289 |
Q |
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| T |
17232329 |
gaagtattgcaaagtgaactgtatgatgaaaagtaagcttgttattctttgtatttattattatgtt |
17232395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 1251243 - 1251283
Alignment:
| Q |
243 |
gtatgatgaaaagtaagcttgttattctttgtatttattat |
283 |
Q |
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| T |
1251243 |
gtatgatgaaaagtaagcttgttaatctttgtatttattat |
1251283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 45204670 - 45204762
Alignment:
| Q |
194 |
atatttttcgggctcggtggatggctcccgaagtattgcaaagtgaactgtatgatgaaaagtaagcttgttattctttgtatttattattat |
286 |
Q |
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| T |
45204670 |
atatttttcaggctgagtggatggctccagaagtgttgagaaacgaactttcagatgaaaagtaagattgttattctcggtatttattattat |
45204762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 38946348 - 38946301
Alignment:
| Q |
144 |
ttattaatcaattcattttttatatcctcctgattgaatgttcatgtt |
191 |
Q |
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| T |
38946348 |
ttatcaatcaattcattctttatatcatccttattgaatgttcatgtt |
38946301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 38946474 - 38946403
Alignment:
| Q |
23 |
tgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatac |
94 |
Q |
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| T |
38946474 |
tgtatatggtatgactttttttacttttgaataggtatgcgatttcaacttatctcaaatgaagtataatac |
38946403 |
T |
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