View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_27 (Length: 329)
Name: NF11301_high_27
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_27 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 1034039 - 1034273
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034039 |
cagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
1034138 |
T |
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| Q |
116 |
ctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgtattgtagcatccaaggtcggaagtggaacctcc |
215 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1034139 |
ctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgtattgtagcatccaaggttggaagtggaacctcc |
1034238 |
T |
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| Q |
216 |
atatttaataagctttttctccttgcaaatttgtt |
250 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
1034239 |
atatttaataagttttttctccttgcaaatttgtt |
1034273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 1044426 - 1044608
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||| |
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| T |
1044426 |
cagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataatagggagacatt |
1044525 |
T |
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| Q |
116 |
ctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgtattgtagcatccaagg |
198 |
Q |
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| T |
1044526 |
ctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgtattgcagcatccaagg |
1044608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 1066041 - 1066197
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
115 |
Q |
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|||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| || ||||||||||||||||| || |
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| T |
1066041 |
cagaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctcctctgaacaaatataacagggagacgtt |
1066140 |
T |
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| Q |
116 |
ctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaa |
172 |
Q |
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| T |
1066141 |
ctacatttctgatccagttctaggttatactgactacccctttcttgaatgaagaaa |
1066197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 1058949 - 1059116
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
115 |
Q |
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|||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||| || || |||||||||| |||||| |
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| T |
1058949 |
cagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctcctctaaacaagtataacagggcgacatt |
1059048 |
T |
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| Q |
116 |
ctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgta |
183 |
Q |
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||||||||| ||| | ||| |||||||||| ||||| || ||||| |||||||||| || ||||||| |
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| T |
1059049 |
ctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
1059116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 1053684 - 1053819
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
115 |
Q |
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|||||||| ||| |||||||||||||||| || | ||||||||||| ||||||||||||||||| || |||||||| || || ||||| ||||||||||| |
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| T |
1053684 |
cagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataatagggagacatt |
1053783 |
T |
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| Q |
116 |
ctacacttctgatgcggttgtaggttatacggacta |
151 |
Q |
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| T |
1053784 |
ctacacttctgatccagttataggttatactgacta |
1053819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 1071776 - 1071921
Alignment:
| Q |
24 |
gttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacactt |
123 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || || ||||||||||||||||| ||| || |
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| T |
1071776 |
gttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctcctctaaacaagtataacagggagacattttacgttt |
1071875 |
T |
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| Q |
124 |
ctgatgcggttgtaggttatacggactatccctttctccaatgaag |
169 |
Q |
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| T |
1071876 |
ctgatccagttctaggttatactgactacccttttcttgaatgaag |
1071921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 1047013 - 1047189
Alignment:
| Q |
17 |
agatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacattc |
116 |
Q |
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||||||||||| ||| | ||||| ||| |||| ||||||||||||||||||||||||||||| || ||||| || || || ||||| | |||||||||| |
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| T |
1047013 |
agatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctcccctaaacaagtataatatggagacattc |
1047112 |
T |
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| Q |
117 |
tacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgta-ttgtagcat |
192 |
Q |
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| T |
1047113 |
tgcacttctgatccagttcttggttataccgactacccttttcttgaatgaataaacatatgttgtacttgtagcat |
1047189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 1640517 - 1640373
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
115 |
Q |
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|||||||||||| ||||||||| ||||| || | ||||||||||| ||||||||||| || || | ||||||||||| || |||||| |||| ||||| |
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| T |
1640517 |
cagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatgctcctctcaacaagtataaccgggaaacatt |
1640418 |
T |
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| Q |
116 |
ctacacttctgatgcggttgtaggttatacggactatccctttct |
160 |
Q |
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|||||| |||||| ||||| | |||||||| ||||| || ||||| |
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| T |
1640417 |
ctacacatctgatccggttctcggttatacagactacccttttct |
1640373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 12121399 - 12121338
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca |
77 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
12121399 |
cagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 65876 - 65937
Alignment:
| Q |
16 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca |
77 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |
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| T |
65876 |
cagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
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