View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_30 (Length: 314)
Name: NF11301_high_30
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_30 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 9938760 - 9939074
Alignment:
| Q |
1 |
ctgtgcactcaatatggtaacaaagttgagtctggatgtcttagttgcttataggcgtgctgaaaatgatgtatgtaactttcttggtcgaccattgagt |
100 |
Q |
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| T |
9938760 |
ctgtgcactcaatatggtaacaaagttgagtctggatgccttagttgcttataggcgtgctgaaaatgatgtatgtaactttcttggtcgaccattgagt |
9938859 |
T |
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| Q |
101 |
tgtcctctaaccagtctattcccatgtaatctttattcggaaaatgtaattgaggggaggatatttttgaact-tgtattacaaacaaatttgcagctcg |
199 |
Q |
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| T |
9938860 |
tgtcctctaactggtctattcccatgtaatctttattcgaaaaatgtaattgaggggaggatatttttggactgcgtattacaaacaaatttgcagctca |
9938959 |
T |
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| Q |
200 |
aacatatttctttctcccgatattgttggtccatccttctccaaatcctcctaatatggaactgatgtcgccttcatcttcagcaatgaggaggagcaat |
299 |
Q |
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| T |
9938960 |
aacatatttctttctcccgatattgttggtccatccttctccaaatcttcctaatatggaattgatgtcgccttcatcttcagcaatgaggaggagcaat |
9939059 |
T |
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| Q |
300 |
catcctttacagtga |
314 |
Q |
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| T |
9939060 |
catcctttacagtga |
9939074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 12888750 - 12888596
Alignment:
| Q |
101 |
tgtcctctaaccagtctattcccatgtaatctttattcggaaaatgtaattgaggggaggatatttttgaactt-gtattacaaacaaattt-gcagctc |
198 |
Q |
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| T |
12888750 |
tgtcctataaccggtctattcccatgtaatatttattcaaagaatgtactcgaggggatgttattattgacatgcgtaacacaaacaaattttgcagctc |
12888651 |
T |
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| Q |
199 |
gaacatatttctttctcccgatattgttggtccatccttctccaaatcctcctaa |
253 |
Q |
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| T |
12888650 |
gaacatacttatttctcgcgatgttattggtcgatccttctgtaactcctcctaa |
12888596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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