View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_32 (Length: 299)
Name: NF11301_high_32
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 38772245 - 38772525
Alignment:
| Q |
10 |
gcataggtacgggtagggcatcgggtacgtcaacaaaaagatgannnnnnnnnn-----atataatattaacatgcaagagctaagttgttcaattcaca |
104 |
Q |
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| T |
38772245 |
gcataggtacgggtagggcatcgggtacgtcaacaaaaagatgatttttttttttttttatataatattaacatgcaagagctaagttgttcaattcaca |
38772344 |
T |
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| Q |
105 |
acaaaaagatcacaataaaacaatattatactagtctatgagagaatcacaaatttcactcgcgatgaaataatgagaaaatgacgtagtattggacacg |
204 |
Q |
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| T |
38772345 |
acaaaaagatcacaataaaccaatattatactagtgtatgagagagtcacaaatttcactcgcgatgaaataatgagaaaatgacgtagtattggacacg |
38772444 |
T |
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| Q |
205 |
ttccatacacatacctgtaccagatacataccgggtacaggtacctcatcgttttacatgtacctatgctttagagtatat |
285 |
Q |
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| T |
38772445 |
ttccatacacatacctgtaccagatacataccgggtacaggtacttcatcgttttacatgtacctatgctttagagtatat |
38772525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 32402634 - 32402677
Alignment:
| Q |
73 |
taacatgcaagagctaagttgttcaattcacaacaaaaagatca |
116 |
Q |
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| T |
32402634 |
taacatgaaagagctaaattgttcaattcacaacaaaaacatca |
32402677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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