View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_34 (Length: 283)
Name: NF11301_high_34
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 31448002 - 31447728
Alignment:
| Q |
5 |
cataaaattcattatctcgataggactgtcaagatttcttttttgtgcgcacacatagagcactcaacactagaggctgcatgcaagttaattgggaata |
104 |
Q |
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| T |
31448002 |
cataaaattcattatctcgataggactgtcaagatttcttttttgtgcgcacacatagagcactcaacactagaggctgcatgcaagttaattgggaata |
31447903 |
T |
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| Q |
105 |
aattctaatttatctttaatcaatattaaagtgcctttatctaaaactaattacgaatcaattactggttcctagctagaaggaaaataaatgttagctg |
204 |
Q |
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| T |
31447902 |
aattctaatttatctttaatcaatattaaagtgcctttatctaaaact--ttacgaatcaattactggttcctagctagaaggaaaataaatgttagctg |
31447805 |
T |
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| Q |
205 |
tcatattttaattaattgtaggatcctagagaataaattaatctgtcatgagtatactataaataggtgttcctttg |
281 |
Q |
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| T |
31447804 |
tcatattttaattaatcgtagaatcctagagaataaattcatctgtcatgagtatactataaataggtgttcctttg |
31447728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 47 - 281
Target Start/End: Complemental strand, 31454796 - 31454566
Alignment:
| Q |
47 |
ttgtgcgcacacatagagcactcaacactagaggctgcatgcaagttaattgggaataaattctaatttatctttaatcaatattaaagtgcctttatct |
146 |
Q |
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| T |
31454796 |
ttgtgcgcacacatagagcactcaacactaga--ctgcatgcaagttatttgggaataaattctaatttatctttaaccaataataaagttcctttatat |
31454699 |
T |
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| Q |
147 |
aaaactaattacgaatcaattactggttcctagctagaaggaaaataaatgttagctgtcatattttaattaattgtaggatcctagagaataaattaat |
246 |
Q |
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| T |
31454698 |
aaaact--ttacgaatcaattactggttcctagctagaaggaaaataaatgttagctgtcatattttaattaatcgtagaatcctagagaataaattcat |
31454601 |
T |
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| Q |
247 |
ctgtcatgagtatactataaataggtgttcctttg |
281 |
Q |
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| T |
31454600 |
ctgtcatgagtatactataaataggtgttactttg |
31454566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 31441652 - 31441579
Alignment:
| Q |
196 |
tgttagctgtcatattttaattaattgtaggatcctagagaataaattaatctgtcatgagtatactataaata |
269 |
Q |
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| T |
31441652 |
tgttagctgtcatatttcaattaattgtaggatcctagagaataaattcatatgacattagtatactataaata |
31441579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 31455450 - 31455416
Alignment:
| Q |
17 |
tatctcgataggactgtcaagatttcttttttgtg |
51 |
Q |
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| T |
31455450 |
tatctcgataggactatcaagatttcttttttgtg |
31455416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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