View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_36 (Length: 271)
Name: NF11301_high_36
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 28940113 - 28940376
Alignment:
| Q |
8 |
aagcagagaataagattgtccgacatgaacatctattgagtcataagacgtttgtacagtgtgagttccctcaacttcaaccaatttcatgatgtggcct |
107 |
Q |
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| T |
28940113 |
aagcacagaataagattgtccgacatgaacatctattgagtcataagacgtttgtacagtgtgagttccctcaacttcaaccaatttcatgatgtggcct |
28940212 |
T |
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| Q |
108 |
tgaatcctaaagttgagtgtgtgttctagtccaacatttgatattctaagtctgtatgttttccctgtagaaaataaatgttaattggttagcacctaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940213 |
tgaatcctaaagttgagtgtgtgttctagtccaacatttgatattctaagtctgtatgttttccctgtagaaaataaatgttaattggttagcacctaaa |
28940312 |
T |
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| Q |
208 |
attcagttaccaagaaaaacatatatgacatacatttaaaaggatccaacaataaatcaaacct |
271 |
Q |
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| T |
28940313 |
attcagttaccaagaaaaacatatatgacatacatttaaaaggatacaacaataaatcgaacct |
28940376 |
T |
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