View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_38 (Length: 262)
Name: NF11301_high_38
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45363381 - 45363608
Alignment:
| Q |
1 |
ccattgttgttggactcagaggaaccctcttgcacgttgccattgttcaggtactt--actttgatttcaacacaaccaatacaacttcgactaagtttg |
98 |
Q |
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| T |
45363381 |
ccattgttgttggactcagaggaaccctcttgaacgttgccattgttcaggtacttttactttgatttcaacacaaccaatacaacttcgactaagtttg |
45363480 |
T |
|
| Q |
99 |
tgtttgaaatcttattgtnnnnnnntataatacaggcagcacttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatat |
198 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45363481 |
tgtttgaaatcttattttaaaaaataataatacaggcagcacttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatat |
45363580 |
T |
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| Q |
199 |
tctcagtacagggtatgtataaataaaa |
226 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45363581 |
tctcagtacagggtatgtataaataaaa |
45363608 |
T |
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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 25043202 - 25043284
Alignment:
| Q |
130 |
acaggcagcacttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattctcagtacagggt |
212 |
Q |
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| T |
25043202 |
acaggcagctcttccacaaggaattgtcccatttgtctttgctaaagaatataatgtacatcctgatattctaagcacagggt |
25043284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 34972904 - 34972965
Alignment:
| Q |
140 |
cttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattct |
201 |
Q |
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| T |
34972904 |
cttccccaaggaatagtcccttttgtgtttgccaaggaatacaatgttcatcctgacattct |
34972965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 33104993 - 33105074
Alignment:
| Q |
132 |
aggcagcacttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattctcagtacagggta |
213 |
Q |
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|||| |||||||| ||||| ||||| |||||||| || |||||||| |||||||| ||||| | ||||| ||||||||||| |
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| T |
33104993 |
aggctgcacttcctcaagggattgttccatttgtgtttgccaaggagtacaatgttcatccagccattcttagtacagggta |
33105074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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