View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_52 (Length: 219)
Name: NF11301_high_52
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 1731955 - 1731765
Alignment:
| Q |
13 |
cagagattagtcatcagcaaagttgatggatgctttgcgcgaataatatggtataaaaataaataaaaactatgcacacaaagcagatacctgaaaagtg |
112 |
Q |
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| T |
1731955 |
cagagattagtcatcagcaaagttgatggatgctttgcgcgaataatatggtatcaaaataaataaaaactatgcacacaaagcagatacctgaaaagtg |
1731856 |
T |
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| Q |
113 |
gtcgtttagctcttccacaatttctgaaccctcaaactgcaa--aaaattatagtgaagtattcgaaaatgaaatgggataagtggctaag |
201 |
Q |
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| T |
1731855 |
gtcgtttagctcttccacaatttctgaaccctcaaactgcaaaaaaaaatatagtgaagtattcgaaaatgaaatgggataagtggctaag |
1731765 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 3305626 - 3305655
Alignment:
| Q |
14 |
agagattagtcatcagcaaagttgatggat |
43 |
Q |
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| T |
3305626 |
agagattagtcatcagcaaagttgatggat |
3305655 |
T |
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